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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 307ChIP-seq
  • 5MeRIP-seq
Assay category
  • 307DNA binding
Target of assay
  • 830histone modification
  • 829histone
  • 511transcription factor
  • 431broad histone mark
  • 397narrow histone mark
  • 312control
  • 111RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 56November, 2017
  • 50August, 2017
  • 32October, 2019
  • 29October, 2018
  • 23May, 2020
  • 21December, 2017
  • 20May, 2019
  • 14April, 2019
  • 12August, 2021
  • 9May, 2021
  • 8February, 2018
  • 8June, 2019
  • 6November, 2018
  • 6September, 2017
  • 5November, 2020
  • 4December, 2018
  • 4January, 2019
  • 3February, 2021
  • 2November, 2019
Available data
  • 276bam
  • 163fastq
  • 49tagAlign
  • 17bigWig
  • 9bed bed3+
Organism
  • 311Homo sapiens
Biosample type
  • 162tissue
  • 83cell line
  • 37in vitro differentiated cells
  • 29primary cell
  • 1stem cell
Organ
  • 108liver
  • 53pancreas
  • 35connective tissue
  • brain
  • 30epithelium
  • 24adipose tissue
  • 22vasculature
  • 21blood vessel
  • 20heart
  • 17limb
  • 12kidney
  • 11nerve
  • 9artery
  • 8spleen
  • 7embryo
  • 6blood
  • 6bodily fluid
  • 6musculature of body
  • 2vein
  • 1eye
Project
  • 312AMP
Genome assembly (visualization)
  • 26hg19
  • 9GRCh38
Lab
  • 295AMP-T2D consortium
  • 8Kyle Gaulton, UCSD
  • 5Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
Audit category:
  • 15inconsistent ontology term
organ_slims!
  • brain
BIOSAMPLE
ASSAY

312 results

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Clear Filters
ChIP-seq
MeRIP-seq
tissue
liver43
islet of Langerhans132
tibial nerve11
subcutaneous adipose tissue10
body of pancreas9
cell line
HepG260
GM128786
Panc16
EndoC_BH123
smooth muscle cell of the coronary artery2
in vitro differentiated cells
adipocyte8
neural progenitor cell7
embryonic stem cell6
pancreatic endoderm5
Hepatic endoderm2
primary cell
pancreatic alpha cell6
pancreatic beta cell6
CD8-positive, alpha-beta T cell3
cardiac fibroblast2
endothelial cell of umbilical vein2
stem cell
hESC1
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