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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1711ChIP-seq
  • 506ATAC-seq
  • 203DNase-seq
  • 83snATAC-seq
  • 69WGBS
  • 62total RNA-seq
  • 52pCHi-C
  • 33Hi-C
  • 20RRBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3single cell RNA-seq
  • 2Capture-C
  • 2HiChIP
  • 1DNAme array
  • 1whole genome sequencing assay
Assay category
  • 1711DNA binding
  • 797DNA accessibility
  • 90DNA methylation
  • 65Transcription
  • 333D chromatin structure
  • 1DNA sequencing
Target of assay
  • 933histone modification
  • 932histone
  • 479narrow histone mark
  • 474transcription factor
  • 453broad histone mark
  • 302control
  • 104RNA binding protein
  • 89recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 284October, 2019
  • 216May, 2021
  • 200June, 2019
  • 196May, 2020
  • 190August, 2017
  • 140May, 2022
  • 129August, 2021
  • 120May, 2019
  • 100February, 2023
  • 94December, 2017
  • 86November, 2018
  • 80April, 2019
  • 59February, 2021
  • 52July, 2019
  • 51October, 2018
  • 47March, 2020
  • 46September, 2018
  • 40May, 2024
  • 40November, 2019
  • 35December, 2018
  • 30January, 2019
  • 24February, 2018
  • 22October, 2017
  • 16January, 2021
  • 11May, 2023
  • 11September, 2017
  • 9April, 2020
  • 7August, 2020
  • 7January, 2018
  • 5March, 2019
  • 3October, 2022
  • 3September, 2020
  • 1August, 2022
  • 1March, 2023
Available data
  • 1925bam
  • 1736bed narrowPeak
  • 1730bigWig
  • 1008bigBed narrowPeak
  • 887fastq
  • 369tagAlign
  • 306bed broadPeak
  • 276bigBed broadPeak
  • 244bed bed3+
  • 114tsv
  • 101zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 23hic
  • 22bedpe bed3+
  • 6bed bed3
  • 4hdf5
  • 4tar
  • 4txt
  • 3bed bedgraph
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2761Homo sapiens
Biosample type
  • 1363tissue
  • 684primary cell
  • 539cell line
  • 168in vitro differentiated cells
  • 7stem cell
Organ
  • 601liver
  • 449pancreas
  • 320epithelium
  • 265brain
  • 231heart
  • 226kidney
  • connective tissue
  • 171vasculature
  • 165blood vessel
  • 119limb
  • 90adipose tissue
  • 88musculature of body
  • 85artery
  • 69blood
  • 69bodily fluid
  • 42eye
  • 42nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 13bone element
  • 12skeleton
  • 10lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 2421AMP
  • 183T1D
  • 147HPAP
  • 9LungMap
  • 1ITG
Genome assembly (visualization)
  • 1755hg19
  • 1694GRCh38
  • 5hg18
Lab
  • 2160AMP-T2D consortium
  • 272Kyle Gaulton, UCSD
  • 147Klaus Kaestner, Upenn
  • 82Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 23Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 9Xin Sun, UCSD
  • 3Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 110inconsistent ontology term
  • 33audit script error
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 72missing controlled_by
Audit category:
  • 50inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

2761 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
WGBS
total RNA-seq
pCHi-C
Hi-C
RRBS
FAIRE-seq
GRO-seq
CRISPR genome editing followed by DNA sequencing
single cell RNA-seq
Capture-C
HiChIP
DNAme array
whole genome sequencing assay
tissue
liver1452023111
islet of Langerhans7068174311
kidney2775136111
heart left ventricle35234111
body of pancreas35442
primary cell
monocyte8515211
pancreatic alpha cell1335311
pancreatic beta cell1323161
Langerhans cell48
CD8-positive, alpha-beta T cell33221
cell line
HepG2378115221
GM12878601
EndoC_BH115191322
Panc11311
smooth muscle cell of the coronary artery68
in vitro differentiated cells
embryonic stem cell4061
neural progenitor cell2110
pancreatic endoderm181
hepatocyte15
definitive endodermal cell81
stem cell
hESC31
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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