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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 736ChIP-seq
  • 224total RNA-seq
  • 180ATAC-seq
  • 91single cell RNA-seq
  • 45DNase-seq
  • 45pCHi-C
  • 18Hi-C
  • 18RRBS
  • 12snATAC-seq
  • 10MeRIP-seq
  • 10small RNA-seq
  • 8WGBS
  • 4FAIRE-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 736DNA binding
  • 325Transcription
  • 241DNA accessibility
  • 27DNA methylation
  • 183D chromatin structure
Target of assay
  • 410transcription factor
  • 254histone
  • 254histone modification
  • 150narrow histone mark
  • 104broad histone mark
  • 88recombinant protein
  • 82RNA binding protein
  • 75control
  • 32chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 146May, 2021
  • 144May, 2020
  • 121October, 2019
  • 64November, 2018
  • 62August, 2021
  • 62December, 2017
  • 52July, 2019
  • 51June, 2019
  • 46February, 2023
  • 46March, 2020
  • 44August, 2017
  • 43July, 2018
  • 37April, 2018
  • 31February, 2021
  • 28December, 2018
  • 23February, 2020
  • 23November, 2019
  • 21January, 2019
  • 14May, 2019
  • 10November, 2020
  • 8October, 2018
  • 7December, 2019
  • 7October, 2017
  • 5January, 2021
  • 5March, 2019
  • 3August, 2018
  • 3October, 2022
  • 2April, 2019
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 1116bam
  • 1033bigWig
  • 706bed narrowPeak
  • 615fastq
  • 515bigBed narrowPeak
  • 350tsv
  • 142tagAlign
  • 121bed broadPeak
  • 119bigBed broadPeak
  • 86bed bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 6bed bed3
  • 4hdf5
  • 4tar
  • 3bed bedgraph
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1411Homo sapiens
Biosample type
  • 463cell line
  • 449primary cell
  • 338tissue
  • 158in vitro differentiated cells
  • 3stem cell
Organ
  • 426liver
  • 201pancreas
  • 169epithelium
  • 96brain
  • connective tissue
  • 58blood
  • 58bodily fluid
  • 58kidney
  • 49vasculature
  • 44blood vessel
  • 41heart
  • 22musculature of body
  • 19vein
  • 17adipose tissue
  • 13embryo
  • 11artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1241AMP
  • 160T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 1100hg19
  • 963GRCh38
Lab
  • 1198AMP-T2D consortium
  • 172Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 120inconsistent ontology term
  • 28inconsistent control
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 22missing controlled_by
Audit category:
  • 34inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • connective tissue
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1411 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
Hi-C
RRBS
snATAC-seq
MeRIP-seq
small RNA-seq
WGBS
FAIRE-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
DNAme array
cell line
HepG2335512112
GM1287856
EndoC_BH122263
Panc11111
H1-hESC8
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
skeletal muscle myoblast15121
tissue
islet of Langerhans221037612134
liver4231111
brain111121
heart531411
kidney12141
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1911
hepatocyte15
cardiomyocytes12
stem cell
hESC3
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