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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 173total RNA-seq
  • 163ChIP-seq
  • 94ATAC-seq
  • 85single cell RNA-seq
  • 26DNase-seq
  • 25pCHi-C
  • 10small RNA-seq
  • 9Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 268Transcription
  • 163DNA binding
  • 128DNA accessibility
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 127histone
  • 127histone modification
  • 88narrow histone mark
  • 39broad histone mark
  • 23transcription factor
  • 15control
  • 9RNA binding protein
  • 2nucleotide modification
Date released
  • 133May, 2021
  • 88May, 2020
  • 47October, 2019
  • 44August, 2021
  • 42July, 2018
  • 40February, 2023
  • 37April, 2018
  • 30July, 2019
  • 30March, 2020
  • 23February, 2020
  • 22August, 2017
  • 22June, 2019
  • 7October, 2017
  • 5March, 2019
  • 4November, 2020
  • 3August, 2018
  • 3December, 2017
  • 3February, 2021
  • 3October, 2022
  • 2January, 2021
  • 2May, 2022
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1October, 2018
  • 1September, 2018
Available data
  • 444bam
  • 427bigWig
  • 281tsv
  • 155bed narrowPeak
  • 116tagAlign
  • 115fastq
  • 50bed bed3+
  • 30bigBed narrowPeak
  • 25bed broadPeak
  • 23bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 5bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 600Homo sapiens
Biosample type
  • 281primary cell
  • 227tissue
  • 92in vitro differentiated cells
Organ
  • 138pancreas
  • 81epithelium
  • 71brain
  • connective tissue
  • 25heart
  • 19kidney
  • 17adipose tissue
  • 16liver
  • 9musculature of body
  • 8bone element
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 458AMP
  • 138T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 446hg19
  • 390GRCh38
Lab
  • 430AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 40inconsistent ontology term
  • 4audit script error
Audit category:
  • 10missing controlled_by
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

600 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
small RNA-seq
Hi-C
snATAC-seq
MeRIP-seq
FAIRE-seq
snDrop-seq
DNAme array
primary cell
monocyte264721
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
tissue
islet of Langerhans10221861224
liver26111
brain612
heart21411
frontal cortex2211
in vitro differentiated cells
neural progenitor cell72110
embryonic stem cell51141
cardiomyocytes12
induced pluripotent stem cell9
cardiomyocytes (cardiac muscle cell)11
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