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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 457ChIP-seq
Assay category
  • 457DNA binding
Target of assay
  • 939histone modification
  • 938histone
  • 481narrow histone mark
  • 474transcription factor
  • 457broad histone mark
  • 308control
  • 104RNA binding protein
  • 89recombinant protein
  • 34chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 76May, 2021
  • 69August, 2017
  • 58May, 2019
  • 55October, 2019
  • 50November, 2017
  • 37April, 2019
  • 20May, 2024
  • 19October, 2018
  • 17September, 2018
  • 15December, 2017
  • 10October, 2017
  • 9August, 2021
  • 8February, 2018
  • 6November, 2019
  • 4January, 2019
  • 4June, 2019
Available data
  • 411bigWig
  • 404bed narrowPeak
  • 362bam
  • 238bigBed narrowPeak
  • 135tagAlign
  • 106fastq
  • 36bed broadPeak
  • 16bigBed broadPeak
  • 12bed bed3+
Organism
  • 453Homo sapiens
Biosample type
  • 283tissue
  • 118primary cell
  • 36in vitro differentiated cells
  • 19cell line
  • 1stem cell
Organ
  • 78pancreas
  • 70brain
  • 57heart
  • 45blood vessel
  • 45vasculature
  • connective tissue
  • 44epithelium
  • 42liver
  • 34limb
  • 20adipose tissue
  • 20musculature of body
  • 16nerve
  • 15kidney
  • 14artery
  • 9vein
  • 4embryo
  • 4spleen
Project
  • 413AMP
  • 44T1D
Genome assembly (visualization)
  • 376GRCh38
  • 355hg19
Lab
  • 362AMP-T2D consortium
  • 74Kyle Gaulton, UCSD
  • 20Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
Audit category:
  • 10inconsistent ontology term
Audit category:
  • 25missing controlled_by
Audit category:
  • 15inconsistent control read length
  • 2inconsistent assembly
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

457 results

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Clear Filters
ChIP-seq
tissue
liver22
left cardiac atrium20
tibial nerve16
heart left ventricle15
islet of Langerhans14
primary cell
monocyte44
CD8-positive, alpha-beta T cell20
pancreatic endocrine cell11
endothelial cell of umbilical vein9
pancreatic ductal cell6
in vitro differentiated cells
embryonic stem cell11
hepatocyte7
neural progenitor cell7
pancreatic endoderm4
definitive endodermal cell2
cell line
HepG29
EndoC_BH16
Panc14
stem cell
hESC1
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