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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 300ChIP-seq
  • 5MeRIP-seq
  • 3single cell RNA-seq
Assay category
  • 300DNA binding
  • 3Transcription
Target of assay
  • 939histone modification
  • 938histone
  • 481narrow histone mark
  • 474transcription factor
  • 457broad histone mark
  • 308control
  • 104RNA binding protein
  • 89recombinant protein
  • 34chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 71November, 2017
  • 39October, 2019
  • 36August, 2017
  • 23May, 2019
  • 23May, 2020
  • 21December, 2017
  • 14April, 2019
  • 12August, 2021
  • 11October, 2018
  • 9May, 2021
  • 8February, 2018
  • 6November, 2018
  • 6September, 2017
  • 5June, 2019
  • 5November, 2020
  • 4December, 2018
  • 4January, 2019
  • 3February, 2021
  • 3July, 2019
  • 3October, 2017
  • 2November, 2019
Available data
  • 278bam
  • 143fastq
  • 65tagAlign
  • 23bigWig
  • 8bed bed3+
  • 3tsv
Organism
  • 307Homo sapiens
Biosample type
  • 163tissue
  • 83cell line
  • 32primary cell
  • 29in vitro differentiated cells
  • 1stem cell
Organ
  • 108liver
  • 53pancreas
  • connective tissue
  • 31brain
  • 30epithelium
  • 24adipose tissue
  • 22vasculature
  • 21blood vessel
  • 20heart
  • 17limb
  • 12kidney
  • 11nerve
  • 9artery
  • 8spleen
  • 7embryo
  • 6blood
  • 6bodily fluid
  • 6musculature of body
  • 2vein
  • 1eye
Project
  • 308AMP
Genome assembly (visualization)
  • 31hg19
  • 11GRCh38
Lab
  • 291AMP-T2D consortium
  • 8Kyle Gaulton, UCSD
  • 5Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
Audit category:
  • 13inconsistent ontology term
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

308 results

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Clear Filters
ChIP-seq
MeRIP-seq
single cell RNA-seq
tissue
liver43
islet of Langerhans132
tibial nerve11
body of pancreas9
spleen8
cell line
HepG260
GM128786
Panc16
EndoC_BH123
smooth muscle cell of the coronary artery2
primary cell
pancreatic alpha cell6
pancreatic beta cell6
CD8-positive, alpha-beta T cell3
cerebellar granule cell2
endothelial cell of umbilical vein2
in vitro differentiated cells
neural progenitor cell7
embryonic stem cell6
pancreatic endoderm5
Hepatic endoderm2
definitive endodermal cell2
stem cell
hESC1
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