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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 939ChIP-seq
Assay category
  • 939DNA binding
Target of assay
  • 939histone modification
  • 938histone
  • 481narrow histone mark
  • 474transcription factor
  • 457broad histone mark
  • 308control
  • 104RNA binding protein
  • 89recombinant protein
  • 34chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 195October, 2019
  • 140May, 2021
  • 130August, 2017
  • 92May, 2019
  • 88November, 2017
  • 60April, 2019
  • 35May, 2024
  • 32September, 2018
  • 31December, 2017
  • 30October, 2018
  • 27May, 2020
  • 20August, 2021
  • 16February, 2018
  • 12October, 2017
  • 11June, 2019
  • 10November, 2019
  • 7January, 2019
  • 3March, 2020
Available data
  • 834bigWig
  • 816bed narrowPeak
  • 751bam
  • 382bigBed narrowPeak
  • 302tagAlign
  • 204fastq
  • 64bed broadPeak
  • 30bigBed broadPeak
  • 25bed bed3+
  • 1tagAlign bed3+
Organism
  • 933Homo sapiens
Biosample type
  • 595tissue
  • 229primary cell
  • 75in vitro differentiated cells
  • 38cell line
  • 2stem cell
Organ
  • 187brain
  • 151pancreas
  • 103liver
  • 97heart
  • 93epithelium
  • connective tissue
  • 71vasculature
  • 70blood vessel
  • 49limb
  • 33musculature of body
  • 32adipose tissue
  • 30kidney
  • 24nerve
  • 20artery
  • 15vein
  • 12embryo
  • 6spleen
  • 4gonad
  • 4ovary
  • 3eye
  • 1blood
  • 1bodily fluid
  • 1lymph node
  • 1pituitary gland
Project
  • 851AMP
  • 88T1D
Genome assembly (visualization)
  • 770GRCh38
  • 749hg19
Lab
  • 767AMP-T2D consortium
  • 134Kyle Gaulton, UCSD
  • 35Patrick T. Ellinor, Broad
  • 3Bing Ren, UCSD
Audit category:
  • 25inconsistent ontology term
Audit category:
  • 54missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

939 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
tissue
liver65
islet of Langerhans50
left cardiac atrium35
heart left ventricle24
tibial nerve24
primary cell
monocyte85
CD8-positive, alpha-beta T cell30
pancreatic endocrine cell23
endothelial cell of umbilical vein15
pancreatic ductal cell13
in vitro differentiated cells
embryonic stem cell22
neural progenitor cell14
hepatocyte12
pancreatic endoderm10
definitive endodermal cell4
cell line
HepG218
EndoC_BH112
Panc17
GM128781
stem cell
hESC2
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