Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2638pQTL
  • 1652candidate regulatory elements
  • 1273target gene predictions
  • 916chromatin state
  • 675gene expression
  • 484differential activity
  • 180eQTL
  • 141variant allelic effects
  • 92binding sites
  • 74Fine-mapped variants
  • 74accessible chromatin
  • 25caQTL
  • 7sQTL
  • 4variant to gene
  • 3meQTL
  • 2other
  • 1representative DNase hypersensitivity sites
Date released
  • 2636February, 2025
  • 2418September, 2022
  • 991February, 2021
  • 320May, 2026
  • 286September, 2023
  • 268February, 2024
  • 236May, 2021
  • 155May, 2020
  • 127March, 2020
  • 111November, 2021
  • 102January, 2022
  • 100October, 2022
  • 73August, 2021
  • 70March, 2023
  • 64February, 2020
  • 40May, 2024
  • 35May, 2022
  • 34August, 2017
  • 30March, 2024
  • 28January, 2021
  • 24January, 2020
  • 21July, 2025
  • 19April, 2020
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 7February, 2023
  • 5October, 2019
  • 4March, 2026
  • 2January, 2018
  • 2January, 2025
  • 2November, 2019
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1November, 2020
Available data
  • 3541tsv
  • 3408bed bed3+
  • 842bed bed9
  • 112txt
  • 90bigWig
  • 40bigBed bed9
  • 34bed bed9+
  • 26csv
  • 7bigBed narrowPeak
  • 1bam
Organism
  • 8193Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 2418EpiMap
  • 929ENCODE
  • 567DGA
  • 320pyxis
  • 281KPMP
  • 252AMP
  • 252T1D
  • 151GTEx
  • 148T2DKP
  • 141 T2DKP
  • 1234DN
  • 101T2D
  • 101eQTLCatalogue
  • 98BLUEPRINT
  • 55HPAP
  • 26FNIH_projects-heart
  • 24CMDGA
  • 12FNIH_projects-liver
Biosample type
  • 4945tissue
  • 2126primary cell
  • 924cell line
  • 241in vitro differentiated cells
  • 3stem cell
Organ
  • 2848vasculature
  • 2805blood vessel
  • 2789bodily fluid
  • 2780blood
  • 2654vein
  • 690epithelium
  • 611kidney
  • 390connective tissue
  • 387brain
  • 342musculature of body
  • 334heart
  • 290lung
  • 255intestine
  • 228pancreas
  • 220limb
  • embryo
  • 164skin of body
  • 154large intestine
  • 138liver
  • 130extraembryonic component
  • 128adipose tissue
  • 110stomach
  • 81small intestine
  • 75uterus
  • 66adrenal gland
  • 66mammary gland
  • 64placenta
  • 62artery
  • 61bone element
  • 60__MARKER__
  • 60ureter
  • 58prostate gland
  • 51penis
  • 45thymus
  • 42eye
  • 42gonad
  • 41esophagus
  • 40lymph node
  • 40spinal cord
  • 31spleen
  • 22nerve
  • 21lymphoid tissue
  • 21ovary
  • 21testis
  • 21thyroid gland
  • 18lymphatic vessel
  • 18mouth
  • 12breast
  • 12pituitary gland
  • 11bronchus
  • 10skeleton
  • 10vagina
  • 9tongue
  • 9urinary bladder
  • 7bone marrow
  • 3nose
  • 1pericardium
Project
  • 7776AMP
  • 281KPMP
  • 111ENCODE
  • 32T1D
  • 19LungMap
  • 17community
  • 5ITG
Genome assembly (visualization)
  • 4295hg19
  • 1337GRCh38
  • 4hg18
organ_slims!
  • embryo
software_used.software.name!
  • macs
BIOSAMPLE
TYPE

8241 results

search-icontable-tab-icon
Clear Filters
pQTL
candidate regulatory elements
target gene predictions
chromatin state
gene expression
differential activity
eQTL
variant allelic effects
binding sites
Fine-mapped variants
accessible chromatin
caQTL
sQTL
variant to gene
meQTL
other
representative DNase hypersensitivity sites
tissue
whole blood26351
heart372021412
stomach40211911
kidney291416711
lung33171611
primary cell
common myeloid progenitor, CD34-positive271413
B cell171082133
endothelial cell37925223
natural killer cell95321812
macrophage332178312
cell line
HeLa-S355531
A5492119181
K56272371
MCF-79651
HFFc619
in vitro differentiated cells
hematopoietic multipotent progenitor cell1910101
neural progenitor cell5547
adipocyte4661
cardiomyocytes11
extended pluripotent stem (EPS) cells9
stem cell
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego