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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 497ChIP-seq
Assay category
  • 497DNA binding
Target of assay
  • 1005histone modification
  • 1004histone
  • 511transcription factor
  • 506narrow histone mark
  • 497broad histone mark
  • 336control
  • 114RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 109August, 2017
  • 76May, 2021
  • 58May, 2019
  • 55October, 2019
  • 50November, 2017
  • 37April, 2019
  • 20May, 2024
  • 19October, 2018
  • 17September, 2018
  • 14December, 2017
  • 10October, 2017
  • 9August, 2021
  • 8June, 2019
  • 6November, 2019
  • 5February, 2018
  • 4January, 2019
Available data
  • 423bigWig
  • 416bed narrowPeak
  • 374bam
  • 242bigBed narrowPeak
  • 147tagAlign
  • 114fastq
  • 36bed broadPeak
  • 16bigBed broadPeak
  • 11bed bed3+
Organism
  • 493Homo sapiens
Biosample type
  • 303tissue
  • 122primary cell
  • 52in vitro differentiated cells
  • 19cell line
  • 1stem cell
Organ
  • 78pancreas
  • 70brain
  • 57heart
  • 45blood vessel
  • 45vasculature
  • 44connective tissue
  • 44epithelium
  • 42liver
  • 34limb
  • 20adipose tissue
  • 20musculature of body
  • 16nerve
  • 15kidney
  • 14artery
  • 9vein
  • embryo
  • 4spleen
Project
  • 453AMP
  • 44T1D
Genome assembly (visualization)
  • 388GRCh38
  • 367hg19
Lab
  • 402AMP-T2D consortium
  • 74Kyle Gaulton, UCSD
  • 20Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
Audit category:
  • 14inconsistent ontology term
Audit category:
  • 25missing controlled_by
Audit category:
  • 14inconsistent control read length
  • 2inconsistent assembly
organ_slims!
  • embryo
BIOSAMPLE
ASSAY

497 results

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Clear Filters
ChIP-seq
tissue
liver22
left cardiac atrium20
subcutaneous abdominal adipose tissue20
tibial nerve16
heart left ventricle15
primary cell
monocyte44
CD8-positive, alpha-beta T cell20
pancreatic endocrine cell11
endothelial cell of umbilical vein9
pancreatic ductal cell6
in vitro differentiated cells
adipocyte20
embryonic stem cell11
hepatocyte7
neural progenitor cell7
definitive endodermal cell2
cell line
HepG29
EndoC_BH16
Panc14
stem cell
hESC1
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