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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1005ChIP-seq
Assay category
  • 1005DNA binding
Target of assay
  • 1005histone modification
  • 1004histone
  • 511transcription factor
  • 506narrow histone mark
  • 497broad histone mark
  • 336control
  • 114RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 199August, 2017
  • 196October, 2019
  • 140May, 2021
  • 92May, 2019
  • 88November, 2017
  • 60April, 2019
  • 35May, 2024
  • 32September, 2018
  • 30October, 2018
  • 27May, 2020
  • 25December, 2017
  • 20August, 2021
  • 19June, 2019
  • 12October, 2017
  • 10February, 2018
  • 10November, 2019
  • 7January, 2019
  • 3March, 2020
Available data
  • 858bigWig
  • 840bed narrowPeak
  • 773bam
  • 391bigBed narrowPeak
  • 321tagAlign
  • 218fastq
  • 65bed broadPeak
  • 30bigBed broadPeak
  • 23bed bed3+
  • 1tagAlign bed3+
Organism
  • 999Homo sapiens
Biosample type
  • 628tissue
  • 237primary cell
  • 100in vitro differentiated cells
  • 38cell line
  • 2stem cell
Organ
  • 187brain
  • 151pancreas
  • 103liver
  • 97heart
  • 93epithelium
  • 78connective tissue
  • 71vasculature
  • 70blood vessel
  • 49limb
  • 33musculature of body
  • 32adipose tissue
  • 30kidney
  • 24nerve
  • 20artery
  • 15vein
  • embryo
  • 6spleen
  • 4gonad
  • 4ovary
  • 3eye
  • 1blood
  • 1bodily fluid
  • 1lymph node
  • 1pituitary gland
Project
  • 917AMP
  • 88T1D
Genome assembly (visualization)
  • 793GRCh38
  • 773hg19
Lab
  • 833AMP-T2D consortium
  • 134Kyle Gaulton, UCSD
  • 35Patrick T. Ellinor, Broad
  • 3Bing Ren, UCSD
Audit category:
  • 31inconsistent ontology term
Audit category:
  • 53missing controlled_by
Audit category:
  • 29inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • embryo
BIOSAMPLE
ASSAY

1005 results

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Clear Filters
ChIP-seq
tissue
liver65
islet of Langerhans51
left cardiac atrium35
subcutaneous abdominal adipose tissue31
heart left ventricle24
primary cell
monocyte85
CD8-positive, alpha-beta T cell30
pancreatic endocrine cell23
endothelial cell of umbilical vein15
pancreatic ductal cell13
in vitro differentiated cells
adipocyte37
embryonic stem cell22
neural progenitor cell14
hepatocyte12
definitive endodermal cell4
cell line
HepG218
EndoC_BH112
Panc17
GM128781
stem cell
hESC2
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