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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1333total RNA-seq
  • 296single cell RNA-seq
  • 86RNA microarray
  • 18small RNA-seq
  • 7ChIP-seq
  • 5STARR-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snATAC-seq
Assay category
  • 1651Transcription
  • 7DNA binding
  • 1DNA accessibility
Target of assay
  • 6histone
  • 6histone modification
  • 4broad histone mark
  • 3control
  • 2narrow histone mark
  • 2nucleotide modification
Date released
  • 623February, 2021
  • 186August, 2021
  • 176May, 2021
  • 145May, 2020
  • 135July, 2018
  • 96August, 2017
  • 60May, 2022
  • 55February, 2023
  • 49July, 2019
  • 47September, 2023
  • 40September, 2020
  • 25February, 2020
  • 23October, 2019
  • 19November, 2019
  • 16April, 2018
  • 15February, 2018
  • 13March, 2020
  • 10April, 2020
  • 8November, 2020
  • 4December, 2019
  • 4March, 2023
  • 4May, 2023
  • 2June, 2018
  • 1November, 2018
  • 1October, 2022
  • 1September, 2018
Available data
  • 1334tsv
  • 1201bam
  • 1196bigWig
  • 226fastq
  • 157txt
  • 52zippedFastqFolder
  • 8csv
  • 7tagAlign
  • 6bed broadPeak
  • 6bed narrowPeak
  • 6bigBed narrowPeak
  • 2bed bed3+
Organism
  • 1744Homo sapiens
Biosample type
  • 1322tissue
  • 216primary cell
  • 136in vitro differentiated cells
  • 82cell line
  • 2stem cell
Organ
  • 497pancreas
  • 476connective tissue
  • 401adipose tissue
  • epithelium
  • 190liver
  • 162heart
  • 146bone element
  • 128kidney
  • 65blood vessel
  • 65vasculature
  • 56artery
  • 21brain
  • 19eye
  • 14embryo
  • 10lung
  • 8musculature of body
  • 4skeleton
  • 3limb
  • 1nerve
  • 1spinal cord
Project
  • 1515AMP
  • 124HPAP
  • 58T1D
  • 47KPMP
  • 10LungMap
  • 4community
Genome assembly (visualization)
  • 1197hg19
  • 1195GRCh38
Lab
  • 1404AMP-T2D consortium
  • 124Klaus Kaestner, Upenn
  • 70Kyle Gaulton, UCSD
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 15Bing Ren, UCSD
  • 10Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
  • 4Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 185inconsistent ontology term
  • 8audit script error
Audit category:
  • 1inconsistent assembly
organ_slims!
  • epithelium
replicates.library.nucleic_acid_term_name!
  • DNA
BIOSAMPLE
ASSAY

1758 results

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Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
small RNA-seq
ChIP-seq
STARR-seq
MeRIP-seq
snDrop-seq
CRISPR RNA-seq
CRISPRi RNA-seq
MPRA
shRNA RNA-seq
siRNA RNA-seq
snATAC-seq
tissue
adipose tissue382
islet of Langerhans29264
liver16711
kidney4964
bone element84
primary cell
Langerhans cell85
monocyte52
exocrine cell39
pancreatic cell9
mesenchymal cell6
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
HepG292
H1-hESC8
EndoC-BH111
HEK293T2
stem cell
SB Ad3.111
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