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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1333total RNA-seq
  • 296single cell RNA-seq
  • 85RNA microarray
  • 18small RNA-seq
  • 5STARR-seq
  • 4MeRIP-seq
  • 3snDrop-seq
Assay category
  • 1647Transcription
Target of assay
  • 2control
  • 2nucleotide modification
Date released
  • 623February, 2021
  • 185August, 2021
  • 176May, 2021
  • 145May, 2020
  • 135July, 2018
  • 89August, 2017
  • 60May, 2022
  • 55February, 2023
  • 49July, 2019
  • 47September, 2023
  • 40September, 2020
  • 25February, 2020
  • 23October, 2019
  • 19November, 2019
  • 16April, 2018
  • 15February, 2018
  • 13March, 2020
  • 9April, 2020
  • 8November, 2020
  • 4December, 2019
  • 4May, 2023
  • 2June, 2018
  • 1November, 2018
  • 1September, 2018
Available data
  • 1334tsv
  • 1194bam
  • 1190bigWig
  • 219fastq
  • 156txt
  • 52zippedFastqFolder
  • 8csv
  • 2bed bed3+
Organism
  • 1744Homo sapiens
Biosample type
  • 1313tissue
  • 216primary cell
  • 136in vitro differentiated cells
  • 79cell line
Organ
  • 489pancreas
  • 475connective tissue
  • 400adipose tissue
  • epithelium
  • 190liver
  • 162heart
  • 146bone element
  • 128kidney
  • 65blood vessel
  • 65vasculature
  • 56artery
  • 21brain
  • 19eye
  • 14embryo
  • 9lung
  • 8musculature of body
  • 4skeleton
  • 3limb
  • 1nerve
  • 1spinal cord
Project
  • 1506AMP
  • 124HPAP
  • 58T1D
  • 47KPMP
  • 9LungMap
Genome assembly (visualization)
  • 1191hg19
  • 1189GRCh38
Lab
  • 1395AMP-T2D consortium
  • 124Klaus Kaestner, Upenn
  • 70Kyle Gaulton, UCSD
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 15Bing Ren, UCSD
  • 9Xin Sun, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 185inconsistent ontology term
  • 8audit script error
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

1744 results

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Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
small RNA-seq
STARR-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue382
islet of Langerhans29264
liver16711
kidney4964
bone element84
primary cell
Langerhans cell85
monocyte52
exocrine cell39
pancreatic cell9
mesenchymal cell6
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
HepG292
H1-hESC8
HEK293T2
early embryonic cell2
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