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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 705ChIP-seq
  • 224total RNA-seq
  • 193ATAC-seq
  • 49pCHi-C
  • 35single cell RNA-seq
  • 34DNase-seq
  • 13Hi-C
  • 13RRBS
  • 12snATAC-seq
  • 11small RNA-seq
  • 4MeRIP-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 2Capture-C
  • 2WGBS
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 705DNA binding
  • 270Transcription
  • 242DNA accessibility
  • 16DNA methylation
  • 133D chromatin structure
Target of assay
  • 413transcription factor
  • 222histone
  • 222histone modification
  • 133narrow histone mark
  • 89broad histone mark
  • 88recombinant protein
  • 75RNA binding protein
  • 70control
  • 31chromatin remodeller
  • 2nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 291November, 2017
  • 145May, 2021
  • 144May, 2020
  • 100October, 2019
  • 64November, 2018
  • 62August, 2021
  • 55August, 2017
  • 53February, 2023
  • 47December, 2017
  • 47July, 2019
  • 47June, 2019
  • 42March, 2020
  • 37February, 2021
  • 28December, 2018
  • 25February, 2020
  • 24November, 2019
  • 21January, 2019
  • 15July, 2018
  • 12April, 2018
  • 10May, 2019
  • 8October, 2018
  • 7October, 2017
  • 5January, 2021
  • 5March, 2019
  • 4November, 2020
  • 2April, 2019
  • 2December, 2019
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 1018bam
  • 940bigWig
  • 673bed narrowPeak
  • 546fastq
  • 479bigBed narrowPeak
  • 287tsv
  • 138tagAlign
  • 107bed broadPeak
  • 105bigBed broadPeak
  • 90bed bed3+
  • 14bed bedMethyl
  • 14bigBed bedMethyl
  • 9bedpe bed3+
  • 8hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 3hdf5
  • 3tar
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1310Homo sapiens
Biosample type
  • 449cell line
  • 353tissue
  • 338primary cell
  • 166in vitro differentiated cells
  • 4stem cell
Organ
  • 426liver
  • 201pancreas
  • epithelium
  • 96brain
  • 68connective tissue
  • 58blood
  • 58bodily fluid
  • 58kidney
  • 49vasculature
  • 44blood vessel
  • 41heart
  • 22musculature of body
  • 19vein
  • 17adipose tissue
  • 13embryo
  • 11artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1152AMP
  • 157T1D
  • 1ITG
Genome assembly (visualization)
  • 1014hg19
  • 873GRCh38
Lab
  • 1107AMP-T2D consortium
  • 173Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 115inconsistent ontology term
  • 28inconsistent control
  • 3audit script error
  • 1inconsistent replicate
Audit category:
  • 26missing controlled_by
Audit category:
  • 38inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • epithelium
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1310 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
DNase-seq
Hi-C
RRBS
snATAC-seq
small RNA-seq
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
Capture-C
WGBS
snDrop-seq
DNAme array
cell line
HepG2335512121
GM1287856
Panc11111
H1-hESC8
RCC 7860 HIF1a re-expression41
tissue
islet of Langerhans221037612134
liver4231111
brain111121
heart531411
kidney12141
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
skeletal muscle myoblast15121
macrophage111
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1911
adipocyte71811
cardiomyocytes12
stem cell
hESC3
mesenchymal stem cell1
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