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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 181total RNA-seq
  • 177ChIP-seq
  • 105ATAC-seq
  • 29single cell RNA-seq
  • 28pCHi-C
  • 23DNase-seq
  • 11small RNA-seq
  • 5Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 221Transcription
  • 177DNA binding
  • 136DNA accessibility
  • 53D chromatin structure
  • 1DNA methylation
Target of assay
  • 130histone
  • 130histone modification
  • 88narrow histone mark
  • 42broad histone mark
  • 33transcription factor
  • 16control
  • 9RNA binding protein
  • 2nucleotide modification
Date released
  • 132May, 2021
  • 88May, 2020
  • 47February, 2023
  • 46October, 2019
  • 44August, 2021
  • 33August, 2017
  • 31July, 2019
  • 31March, 2020
  • 28June, 2019
  • 25February, 2020
  • 14July, 2018
  • 12April, 2018
  • 11February, 2021
  • 7October, 2017
  • 5March, 2019
  • 4November, 2020
  • 3December, 2017
  • 2January, 2021
  • 2May, 2022
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1November, 2019
  • 1October, 2018
  • 1September, 2018
Available data
  • 408bam
  • 393bigWig
  • 233tsv
  • 168bed narrowPeak
  • 112tagAlign
  • 71fastq
  • 63bed bed3+
  • 38bigBed narrowPeak
  • 24bed broadPeak
  • 22bigBed broadPeak
  • 6bed bed3
  • 5txt
  • 4hic
  • 3bedpe bed3+
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 576Homo sapiens
Biosample type
  • 242tissue
  • 223primary cell
  • 110in vitro differentiated cells
  • 1stem cell
Organ
  • 138pancreas
  • epithelium
  • 71brain
  • 57connective tissue
  • 25heart
  • 19kidney
  • 17adipose tissue
  • 16liver
  • 9musculature of body
  • 8bone element
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 437AMP
  • 138T1D
  • 1ITG
Genome assembly (visualization)
  • 418hg19
  • 353GRCh38
Lab
  • 405AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 50inconsistent ontology term
  • 1audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

576 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
small RNA-seq
Hi-C
snATAC-seq
MeRIP-seq
FAIRE-seq
Capture-C
snDrop-seq
DNAme array
tissue
islet of Langerhans10221861224
liver26111
brain612
heart21411
frontal cortex2211
primary cell
monocyte264721
mesenchymal stem cell7
pancreatic cell6
CD8-positive, alpha-beta T cell221
B cell22
in vitro differentiated cells
neural progenitor cell72110
embryonic stem cell51141
adipocyte1741
cardiomyocytes12
induced pluripotent stem cell9
stem cell
mesenchymal stem cell1
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