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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 528ChIP-seq
  • 88ATAC-seq
  • 43total RNA-seq
  • 21pCHi-C
  • 13RRBS
  • 11DNase-seq
  • 8Hi-C
  • 7snATAC-seq
  • 6single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2WGBS
Assay category
  • 528DNA binding
  • 106DNA accessibility
  • 49Transcription
  • 15DNA methylation
  • 83D chromatin structure
Target of assay
  • 380transcription factor
  • 92histone
  • 92histone modification
  • 88recombinant protein
  • 66RNA binding protein
  • 54control
  • 47broad histone mark
  • 45narrow histone mark
  • 31chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 291November, 2017
  • 62November, 2018
  • 56May, 2020
  • 54October, 2019
  • 44December, 2017
  • 28December, 2018
  • 26February, 2021
  • 23November, 2019
  • 22August, 2017
  • 21January, 2019
  • 19June, 2019
  • 18August, 2021
  • 16July, 2019
  • 13May, 2021
  • 11March, 2020
  • 10May, 2019
  • 7October, 2018
  • 6February, 2023
  • 3January, 2021
  • 2December, 2019
  • 1April, 2019
  • 1July, 2018
Available data
  • 610bam
  • 547bigWig
  • 505bed narrowPeak
  • 475fastq
  • 441bigBed narrowPeak
  • 83bed broadPeak
  • 83bigBed broadPeak
  • 54tsv
  • 27bed bed3+
  • 26tagAlign
  • 14bed bedMethyl
  • 14bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 4hic
  • 3hdf5
  • 3tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 734Homo sapiens
Biosample type
  • 449cell line
  • 115primary cell
  • 111tissue
  • 56in vitro differentiated cells
  • 3stem cell
Organ
  • 410liver
  • epithelium
  • 63pancreas
  • 56blood
  • 56bodily fluid
  • 42vasculature
  • 39kidney
  • 37blood vessel
  • 25brain
  • 18vein
  • 16heart
  • 13musculature of body
  • 11connective tissue
  • 11embryo
  • 7artery
  • 5limb
  • 4eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 715AMP
  • 19T1D
Genome assembly (visualization)
  • 596hg19
  • 520GRCh38
Lab
  • 702AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 65inconsistent ontology term
  • 28inconsistent control
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 34inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

734 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
RRBS
DNase-seq
Hi-C
snATAC-seq
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
WGBS
cell line
HepG2335152121
GM1287856
Panc11111
H1-hESC8
RCC 7860 HIF1a re-expression41
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
skeletal muscle myoblast15112
macrophage11
skeletal muscle satellite cell8
tissue
liver3611
islet of Langerhans1911
body of pancreas7
brain511
thoracic aorta7
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1191
cardiomyocytes (cardiac muscle cell)12122
adipocyte41
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
Posterior foregut3
stem cell
hESC3
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