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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 457ChIP-seq
Assay category
  • 457DNA binding
Target of assay
  • 924histone modification
  • 923histone
  • 505transcription factor
  • 465narrow histone mark
  • 457broad histone mark
  • 313control
  • 106RNA binding protein
  • 89recombinant protein
  • 35chromatin remodeller
  • 5other context
  • 5other post-translational modification
  • 2nucleotide modification
Date released
  • 103August, 2017
  • 76May, 2021
  • 56May, 2019
  • 50November, 2017
  • 43October, 2019
  • 37April, 2019
  • 20May, 2024
  • 19October, 2018
  • 10October, 2017
  • 8August, 2021
  • 8December, 2017
  • 8February, 2018
  • 8June, 2019
  • 7September, 2018
  • 4January, 2019
Available data
  • 385bigWig
  • 380bed narrowPeak
  • 334bam
  • 228bigBed narrowPeak
  • 146tagAlign
  • 95fastq
  • 34bed broadPeak
  • 14bigBed broadPeak
  • 11bed bed3+
Organism
  • 453Homo sapiens
Biosample type
  • 303tissue
  • 91primary cell
  • 49in vitro differentiated cells
  • 13cell line
  • 1stem cell
Organ
  • 78pancreas
  • 70brain
  • 57heart
  • 45blood vessel
  • 45vasculature
  • 44connective tissue
  • epithelium
  • 42liver
  • 34limb
  • 20adipose tissue
  • 20musculature of body
  • 16nerve
  • 15kidney
  • 14artery
  • 9vein
  • 4embryo
  • 4spleen
Project
  • 413AMP
  • 44T1D
Genome assembly (visualization)
  • 352GRCh38
  • 329hg19
Lab
  • 362AMP-T2D consortium
  • 74Kyle Gaulton, UCSD
  • 20Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
Audit category:
  • 8inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 15inconsistent control read length
  • 2inconsistent assembly
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

457 results

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Clear Filters
ChIP-seq
tissue
liver22
left cardiac atrium20
subcutaneous abdominal adipose tissue20
tibial nerve16
heart left ventricle15
primary cell
monocyte44
CD8-positive, alpha-beta T cell20
pancreatic endocrine cell11
skeletal muscle myoblast6
mesenchymal stem cell4
in vitro differentiated cells
adipocyte20
embryonic stem cell11
neural progenitor cell7
pancreatic endoderm4
definitive endodermal cell2
cell line
HepG29
Panc14
stem cell
hESC1
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