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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 308ChIP-seq
  • 3single cell RNA-seq
  • 2MeRIP-seq
Assay category
  • 308DNA binding
  • 3Transcription
Target of assay
  • 924histone modification
  • 923histone
  • 505transcription factor
  • 465narrow histone mark
  • 457broad histone mark
  • 313control
  • 106RNA binding protein
  • 89recombinant protein
  • 35chromatin remodeller
  • 5other context
  • 5other post-translational modification
  • 2nucleotide modification
Date released
  • 69November, 2017
  • 38August, 2017
  • 36October, 2019
  • 29October, 2018
  • 23May, 2020
  • 22May, 2019
  • 18December, 2017
  • 14April, 2019
  • 11August, 2021
  • 8February, 2018
  • 8May, 2021
  • 6June, 2019
  • 6November, 2018
  • 6September, 2017
  • 4December, 2018
  • 4January, 2019
  • 3February, 2021
  • 3July, 2019
  • 3October, 2017
  • 2November, 2020
Available data
  • 279bam
  • 151fastq
  • 66tagAlign
  • 21bigWig
  • 9bed bed3+
  • 3tsv
Organism
  • 312Homo sapiens
Biosample type
  • 187tissue
  • 78cell line
  • 33in vitro differentiated cells
  • 14primary cell
  • 1stem cell
Organ
  • 108liver
  • 53pancreas
  • 35connective tissue
  • 31brain
  • epithelium
  • 24adipose tissue
  • 22vasculature
  • 21blood vessel
  • 20heart
  • 17limb
  • 12kidney
  • 11nerve
  • 9artery
  • 8spleen
  • 7embryo
  • 6blood
  • 6bodily fluid
  • 6musculature of body
  • 2vein
  • 1eye
Project
  • 313AMP
Genome assembly (visualization)
  • 30hg19
  • 12GRCh38
Lab
  • 299AMP-T2D consortium
  • 8Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 2Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 6inconsistent ontology term
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

313 results

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Clear Filters
ChIP-seq
single cell RNA-seq
MeRIP-seq
tissue
liver43
islet of Langerhans132
tibial nerve11
subcutaneous adipose tissue10
body of pancreas9
cell line
HepG260
GM128786
Panc16
smooth muscle cell of the coronary artery2
RCC 7860 HIF1a re-expression1
in vitro differentiated cells
adipocyte8
neural progenitor cell7
embryonic stem cell6
pancreatic endoderm5
definitive endodermal cell2
primary cell
CD8-positive, alpha-beta T cell3
cardiac fibroblast2
cerebellar granule cell2
Purkinje cell1
astrocyte of the cerebellum1
stem cell
hESC1
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