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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 923ChIP-seq
Assay category
  • 923DNA binding
Target of assay
  • 924histone modification
  • 923histone
  • 505transcription factor
  • 465narrow histone mark
  • 457broad histone mark
  • 313control
  • 106RNA binding protein
  • 89recombinant protein
  • 35chromatin remodeller
  • 5other context
  • 5other post-translational modification
  • 2nucleotide modification
Date released
  • 184August, 2017
  • 175October, 2019
  • 138May, 2021
  • 89May, 2019
  • 86November, 2017
  • 60April, 2019
  • 35May, 2024
  • 30October, 2018
  • 27May, 2020
  • 17August, 2021
  • 17December, 2017
  • 17June, 2019
  • 16February, 2018
  • 12October, 2017
  • 11September, 2018
  • 7January, 2019
  • 2March, 2020
Available data
  • 778bigWig
  • 762bed narrowPeak
  • 691bam
  • 362bigBed narrowPeak
  • 317tagAlign
  • 178fastq
  • 61bed broadPeak
  • 26bigBed broadPeak
  • 22bed bed3+
  • 1tagAlign bed3+
Organism
  • 917Homo sapiens
Biosample type
  • 627tissue
  • 171primary cell
  • 97in vitro differentiated cells
  • 26cell line
  • 2stem cell
Organ
  • 187brain
  • 151pancreas
  • 102liver
  • 97heart
  • epithelium
  • 78connective tissue
  • 71vasculature
  • 70blood vessel
  • 49limb
  • 33musculature of body
  • 32adipose tissue
  • 30kidney
  • 24nerve
  • 20artery
  • 15vein
  • 12embryo
  • 6spleen
  • 4gonad
  • 4ovary
  • 3eye
  • 1blood
  • 1bodily fluid
  • 1lymph node
  • 1pituitary gland
Project
  • 837AMP
  • 86T1D
Genome assembly (visualization)
  • 715GRCh38
  • 693hg19
Lab
  • 751AMP-T2D consortium
  • 134Kyle Gaulton, UCSD
  • 35Patrick T. Ellinor, Broad
  • 3Bing Ren, UCSD
Audit category:
  • 17inconsistent ontology term
Audit category:
  • 33missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

923 results

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Clear Filters
ChIP-seq
tissue
liver64
islet of Langerhans51
left cardiac atrium35
subcutaneous abdominal adipose tissue31
heart left ventricle24
primary cell
monocyte85
CD8-positive, alpha-beta T cell30
pancreatic endocrine cell23
skeletal muscle myoblast12
skeletal muscle satellite cell7
in vitro differentiated cells
adipocyte37
embryonic stem cell22
neural progenitor cell14
pancreatic endoderm10
definitive endodermal cell4
cell line
HepG218
Panc17
GM128781
stem cell
hESC2
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