Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 465ChIP-seq
Assay category
  • 465DNA binding
Target of assay
  • 924histone modification
  • 923histone
  • 505transcription factor
  • 465narrow histone mark
  • 457broad histone mark
  • 313control
  • 106RNA binding protein
  • 89recombinant protein
  • 35chromatin remodeller
  • 5other context
  • 5other post-translational modification
  • 2nucleotide modification
Date released
  • 132October, 2019
  • 80August, 2017
  • 62May, 2021
  • 36November, 2017
  • 33May, 2019
  • 27May, 2020
  • 23April, 2019
  • 15May, 2024
  • 11October, 2018
  • 9August, 2021
  • 9December, 2017
  • 9June, 2019
  • 8February, 2018
  • 4September, 2018
  • 3January, 2019
  • 2March, 2020
  • 2October, 2017
Available data
  • 392bigWig
  • 381bed narrowPeak
  • 356bam
  • 171tagAlign
  • 134bigBed narrowPeak
  • 82fastq
  • 27bed broadPeak
  • 12bigBed broadPeak
  • 11bed bed3+
  • 1tagAlign bed3+
Organism
  • 463Homo sapiens
Biosample type
  • 324tissue
  • 80primary cell
  • 47in vitro differentiated cells
  • 13cell line
  • 1stem cell
Organ
  • 117brain
  • 73pancreas
  • 60liver
  • epithelium
  • 40heart
  • 33connective tissue
  • 26vasculature
  • 25blood vessel
  • 15kidney
  • 15limb
  • 13musculature of body
  • 12adipose tissue
  • 8embryo
  • 8nerve
  • 6artery
  • 6vein
  • 4gonad
  • 4ovary
  • 3eye
  • 2spleen
  • 1blood
  • 1bodily fluid
  • 1lymph node
  • 1pituitary gland
Project
  • 423AMP
  • 42T1D
Genome assembly (visualization)
  • 363hg19
  • 362GRCh38
Lab
  • 388AMP-T2D consortium
  • 60Kyle Gaulton, UCSD
  • 15Patrick T. Ellinor, Broad
  • 2Bing Ren, UCSD
Audit category:
  • 9inconsistent ontology term
Audit category:
  • 18missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

465 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
tissue
liver42
islet of Langerhans37
left cardiac atrium15
subcutaneous abdominal adipose tissue11
kidney10
primary cell
monocyte41
pancreatic endocrine cell12
CD8-positive, alpha-beta T cell10
skeletal muscle myoblast6
skeletal muscle satellite cell3
in vitro differentiated cells
adipocyte16
embryonic stem cell11
neural progenitor cell7
pancreatic endoderm6
definitive endodermal cell2
cell line
HepG29
Panc13
GM128781
stem cell
hESC1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego