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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 505ChIP-seq
Assay category
  • 505DNA binding
Target of assay
  • 924histone modification
  • 923histone
  • 505transcription factor
  • 465narrow histone mark
  • 457broad histone mark
  • 313control
  • 106RNA binding protein
  • 89recombinant protein
  • 35chromatin remodeller
  • 5other context
  • 5other post-translational modification
  • 2nucleotide modification
Date released
  • 242November, 2017
  • 64November, 2018
  • 47August, 2017
  • 40December, 2017
  • 28December, 2018
  • 15May, 2021
  • 15October, 2018
  • 14January, 2019
  • 11August, 2021
  • 7October, 2019
  • 6April, 2019
  • 5February, 2021
  • 5May, 2024
  • 4May, 2019
  • 2June, 2019
Available data
  • 487bigWig
  • 476bam
  • 460bed narrowPeak
  • 450fastq
  • 398bigBed narrowPeak
  • 47bed broadPeak
  • 47bigBed broadPeak
  • 19bed bed3+
  • 8tagAlign
  • 3tar
Organism
  • 505Homo sapiens
Biosample type
  • 360cell line
  • 94tissue
  • 46in vitro differentiated cells
  • 5primary cell
Organ
  • 338liver
  • 51blood
  • 51bodily fluid
  • 40connective tissue
  • 19pancreas
  • 17adipose tissue
  • 17heart
  • 10kidney
  • epithelium
  • 9vasculature
  • 8blood vessel
  • 6spleen
  • 5artery
  • 3brain
  • 3embryo
  • 1eye
Project
  • 505AMP
Genome assembly (visualization)
  • 478hg19
  • 439GRCh38
Lab
  • 477AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 28inconsistent control
  • 11inconsistent ontology term
Audit category:
  • 35missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 8inconsistent control run_type
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

505 results

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Clear Filters
ChIP-seq
cell line
HepG2297
GM1287851
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
tissue
liver37
white adipose tissue12
body of pancreas9
islet of Langerhans7
spleen6
in vitro differentiated cells
adipocyte22
embryonic stem cell12
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
cardiac fibroblast1
cardiac muscle cell1
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