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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 181ChIP-seq
  • 178total RNA-seq
  • 105ATAC-seq
  • 88single cell RNA-seq
  • 25pCHi-C
  • 20DNase-seq
  • 10small RNA-seq
  • 8Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 276Transcription
  • 181DNA binding
  • 133DNA accessibility
  • 83D chromatin structure
  • 1DNA methylation
Target of assay
  • 133histone
  • 133histone modification
  • 90narrow histone mark
  • 43broad histone mark
  • 33transcription factor
  • 17control
  • 9RNA binding protein
  • 2nucleotide modification
Date released
  • 131May, 2021
  • 88May, 2020
  • 48August, 2021
  • 48October, 2019
  • 46February, 2023
  • 44July, 2018
  • 39April, 2018
  • 33August, 2017
  • 30July, 2019
  • 29March, 2020
  • 23June, 2019
  • 22February, 2020
  • 11February, 2021
  • 7October, 2017
  • 5March, 2019
  • 4November, 2020
  • 3August, 2018
  • 3December, 2017
  • 3October, 2022
  • 2January, 2021
  • 2May, 2022
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1November, 2019
  • 1October, 2018
  • 1September, 2018
Available data
  • 466bam
  • 450bigWig
  • 286tsv
  • 166bed narrowPeak
  • 129fastq
  • 116tagAlign
  • 61bed bed3+
  • 33bigBed narrowPeak
  • 19bed broadPeak
  • 17bigBed broadPeak
  • 7hic
  • 6bed bed3
  • 6bedpe bed3+
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 632Homo sapiens
Biosample type
  • 297primary cell
  • 223tissue
  • 111in vitro differentiated cells
  • 1stem cell
Organ
  • 138pancreas
  • 81epithelium
  • 71brain
  • 57connective tissue
  • heart
  • 19kidney
  • 17adipose tissue
  • 16liver
  • 9musculature of body
  • 8bone element
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 490AMP
  • 138T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 479hg19
  • 410GRCh38
Lab
  • 458AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 51inconsistent ontology term
  • 4audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
organ_slims!
  • heart
BIOSAMPLE
ASSAY

632 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
small RNA-seq
Hi-C
snATAC-seq
MeRIP-seq
FAIRE-seq
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte472621
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
tissue
islet of Langerhans22101861224
liver62111
brain612
frontal cortex2211
pancreas11111
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11541
adipocyte7141
cardiomyocytes12
induced pluripotent stem cell9
stem cell
mesenchymal stem cell1
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