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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 497ChIP-seq
Assay category
  • 497DNA binding
Target of assay
  • 920histone modification
  • 919histone
  • 497transcription factor
  • 474narrow histone mark
  • 444broad histone mark
  • 323control
  • 103RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 244November, 2017
  • 64November, 2018
  • 47August, 2017
  • 42December, 2017
  • 28December, 2018
  • 16May, 2021
  • 15October, 2018
  • 14January, 2019
  • 11August, 2021
  • 7October, 2019
  • 3June, 2019
  • 3May, 2019
  • 1April, 2019
  • 1February, 2021
  • 1November, 2019
Available data
  • 479bigWig
  • 473bam
  • 454fastq
  • 452bed narrowPeak
  • 397bigBed narrowPeak
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 19bed bed3+
  • 5tagAlign
  • 3tar
Organism
  • 497Homo sapiens
Biosample type
  • 357cell line
  • 82tissue
  • 49in vitro differentiated cells
  • 9primary cell
Organ
  • 338liver
  • 51blood
  • 51bodily fluid
  • 40connective tissue
  • 19pancreas
  • 17adipose tissue
  • heart
  • 10kidney
  • 9epithelium
  • 9vasculature
  • 8blood vessel
  • 6spleen
  • 5artery
  • 3brain
  • 3embryo
  • 1eye
Project
  • 497AMP
Genome assembly (visualization)
  • 475hg19
  • 431GRCh38
Lab
  • 474AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
Audit category:
  • 28inconsistent control
  • 13inconsistent ontology term
Audit category:
  • 35missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 8inconsistent control run_type
organ_slims!
  • heart
BIOSAMPLE
ASSAY

497 results

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Clear Filters
ChIP-seq
cell line
HepG2297
GM1287851
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
RCC 7860 vector2
tissue
liver37
white adipose tissue12
body of pancreas9
islet of Langerhans7
spleen6
in vitro differentiated cells
adipocyte22
embryonic stem cell12
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac muscle cell1
choroid plexus epithelial cell1
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