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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 738ChIP-seq
  • 230total RNA-seq
  • 195ATAC-seq
  • 95single cell RNA-seq
  • 47pCHi-C
  • 35DNase-seq
  • 19Hi-C
  • 15RRBS
  • 10MeRIP-seq
  • 10small RNA-seq
  • 8WGBS
  • 8snATAC-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 2Capture-C
  • 2STARR-seq
  • 1DNAme array
Assay category
  • 738DNA binding
  • 335Transcription
  • 241DNA accessibility
  • 24DNA methylation
  • 193D chromatin structure
Target of assay
  • 410transcription factor
  • 257histone
  • 257histone modification
  • 151narrow histone mark
  • 106broad histone mark
  • 81recombinant protein
  • 79RNA binding protein
  • 74control
  • 32chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 148May, 2021
  • 144May, 2020
  • 105October, 2019
  • 64November, 2018
  • 62December, 2017
  • 60August, 2021
  • 56August, 2017
  • 53February, 2023
  • 49July, 2019
  • 49June, 2019
  • 46March, 2020
  • 45July, 2018
  • 41February, 2021
  • 39April, 2018
  • 28December, 2018
  • 25February, 2020
  • 24November, 2019
  • 21January, 2019
  • 10May, 2019
  • 10November, 2020
  • 8October, 2018
  • 7December, 2019
  • 7October, 2017
  • 5January, 2021
  • 5March, 2019
  • 3August, 2018
  • 3October, 2022
  • 2May, 2022
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 1117bam
  • 1040bigWig
  • 702bed narrowPeak
  • 630fastq
  • 510bigBed narrowPeak
  • 355tsv
  • 142tagAlign
  • 114bed broadPeak
  • 112bigBed broadPeak
  • 96bed bed3+
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1421Homo sapiens
Biosample type
  • 451primary cell
  • 444cell line
  • 339tissue
  • 183in vitro differentiated cells
  • 4stem cell
Organ
  • 426liver
  • 201pancreas
  • 169epithelium
  • 96brain
  • 68connective tissue
  • 58blood
  • 58bodily fluid
  • kidney
  • 49vasculature
  • 44blood vessel
  • 41heart
  • 22musculature of body
  • 19vein
  • 17adipose tissue
  • 13embryo
  • 11artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1250AMP
  • 161T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 1121hg19
  • 967GRCh38
Lab
  • 1209AMP-T2D consortium
  • 173Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 8Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 113inconsistent ontology term
  • 28inconsistent control
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 26missing controlled_by
Audit category:
  • 38inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • kidney
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1421 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
Hi-C
RRBS
MeRIP-seq
small RNA-seq
WGBS
snATAC-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
Capture-C
STARR-seq
DNAme array
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
skeletal muscle myoblast15121
cell line
HepG2335512112
GM1287856
EndoC_BH122263
Panc11111
H1-hESC8
tissue
islet of Langerhans221037612143
liver4231111
brain111121
heart531411
body of pancreas71
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1911
adipocyte71811
hepatocyte15
stem cell
hESC3
mesenchymal stem cell1
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