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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1312ChIP-seq
  • 508ATAC-seq
  • 206DNase-seq
  • 83snATAC-seq
  • 70WGBS
  • 63total RNA-seq
  • 54pCHi-C
  • 30Hi-C
  • 19RRBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3single cell RNA-seq
  • 2HiChIP
  • 1DNAme array
Assay category
  • 1312DNA binding
  • 802DNA accessibility
  • 90DNA methylation
  • 66Transcription
  • 303D chromatin structure
Target of assay
  • 908histone
  • 908histone modification
  • 455broad histone mark
  • 452narrow histone mark
  • 229control
  • 176transcription factor
  • 56RNA binding protein
  • 13chromatin remodeller
  • 7recombinant protein
  • 3other context
  • 3other post-translational modification
Date released
  • 282October, 2019
  • 261August, 2017
  • 217May, 2021
  • 216June, 2019
  • 145May, 2020
  • 120May, 2019
  • 120May, 2022
  • 110February, 2023
  • 109August, 2021
  • 91November, 2017
  • 80April, 2019
  • 74October, 2018
  • 64February, 2021
  • 56July, 2019
  • 47March, 2020
  • 46September, 2018
  • 41November, 2019
  • 40May, 2024
  • 34December, 2018
  • 34November, 2018
  • 31December, 2017
  • 25January, 2019
  • 24February, 2018
  • 23October, 2017
  • 16January, 2021
  • 11May, 2023
  • 11September, 2017
  • 9April, 2020
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 3October, 2022
  • 3September, 2020
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
  • 1March, 2023
Available data
  • 1526bam
  • 1370bed narrowPeak
  • 1367bigWig
  • 678bigBed narrowPeak
  • 520fastq
  • 305tagAlign
  • 258bed bed3+
  • 253bed broadPeak
  • 222bigBed broadPeak
  • 115tsv
  • 101zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 7bed bedgraph
  • 4hdf5
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 2368Homo sapiens
Biosample type
  • 1265tissue
  • 705primary cell
  • 241in vitro differentiated cells
  • 149cell line
  • 8stem cell
Organ
  • liver
  • 449pancreas
  • 320epithelium
  • 265brain
  • 231heart
  • 226kidney
  • 208connective tissue
  • 171vasculature
  • 165blood vessel
  • 119limb
  • 90adipose tissue
  • 88musculature of body
  • 85artery
  • 69blood
  • 69bodily fluid
  • 42eye
  • 42nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 13bone element
  • 12skeleton
  • 10lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 2027AMP
  • 184T1D
  • 147HPAP
  • 9LungMap
  • 1ITG
Genome assembly (visualization)
  • 1417GRCh38
  • 1407hg19
  • 5hg18
Lab
  • 1802AMP-T2D consortium
  • 273Kyle Gaulton, UCSD
  • 147Klaus Kaestner, Upenn
  • 82Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 9Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 3Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 126inconsistent ontology term
  • 33audit script error
  • 1inconsistent control
Audit category:
  • 76missing controlled_by
Audit category:
  • 29inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • liver
BIOSAMPLE
ASSAY

2368 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
WGBS
total RNA-seq
pCHi-C
Hi-C
RRBS
FAIRE-seq
GRO-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
single cell RNA-seq
HiChIP
DNAme array
tissue
islet of Langerhans7168174311
kidney2775136111
heart left ventricle35234111
body of pancreas35442
coronary artery5362
primary cell
monocyte8515211
pancreatic alpha cell1335311
pancreatic beta cell1323161
Langerhans cell48
CD8-positive, alpha-beta T cell33221
in vitro differentiated cells
adipocyte67811
embryonic stem cell4061
neural progenitor cell2110
pancreatic endoderm181
definitive endodermal cell81
cell line
GM12878601
EndoC_BH115191232
Panc11311
smooth muscle cell of the coronary artery68
RCC 7860 HIF1a re-expression4
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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