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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 357ChIP-seq
  • 227total RNA-seq
  • 194ATAC-seq
  • 94single cell RNA-seq
  • 48DNase-seq
  • 46pCHi-C
  • 17Hi-C
  • 17RRBS
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 6WGBS
  • 4FAIRE-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2STARR-seq
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 357DNA binding
  • 332Transcription
  • 258DNA accessibility
  • 24DNA methylation
  • 173D chromatin structure
Target of assay
  • 224histone
  • 224histone modification
  • 135narrow histone mark
  • 96transcription factor
  • 89broad histone mark
  • 43control
  • 26RNA binding protein
  • 9chromatin remodeller
  • 7recombinant protein
  • 5nucleotide modification
Date released
  • 148May, 2021
  • 143May, 2020
  • 118October, 2019
  • 62June, 2019
  • 58August, 2021
  • 55July, 2019
  • 53February, 2023
  • 52August, 2017
  • 47March, 2020
  • 45July, 2018
  • 40February, 2021
  • 39April, 2018
  • 27December, 2018
  • 24February, 2020
  • 24November, 2019
  • 16January, 2019
  • 15December, 2017
  • 14May, 2019
  • 14November, 2018
  • 10November, 2020
  • 8October, 2018
  • 7October, 2017
  • 6November, 2017
  • 5January, 2021
  • 5March, 2019
  • 3August, 2018
  • 3October, 2022
  • 2April, 2019
  • 2December, 2019
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 748bam
  • 693bigWig
  • 372bed narrowPeak
  • 355tsv
  • 234fastq
  • 186bigBed narrowPeak
  • 126tagAlign
  • 98bed bed3+
  • 66bed broadPeak
  • 64bigBed broadPeak
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bedgraph
  • 6bed bed3
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1csv
  • 1tagAlign bed3+
  • 1tar
Organism
  • 1053Homo sapiens
Biosample type
  • 465primary cell
  • 300tissue
  • 168in vitro differentiated cells
  • 116cell line
  • 4stem cell
Organ
  • liver
  • 201pancreas
  • 169epithelium
  • 96brain
  • 68connective tissue
  • 58blood
  • 58bodily fluid
  • 58kidney
  • 49vasculature
  • 44blood vessel
  • 41heart
  • 22musculature of body
  • 19vein
  • 17adipose tissue
  • 13embryo
  • 11artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 882AMP
  • 161T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 773hg19
  • 667GRCh38
Lab
  • 839AMP-T2D consortium
  • 173Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 7Struan F.A. Grant, CHOP
  • 6Bing Ren, UCSD
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 134inconsistent ontology term
  • 6audit script error
  • 1inconsistent control
Audit category:
  • 14missing controlled_by
Audit category:
  • 12inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • liver
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1053 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
Hi-C
RRBS
snATAC-seq
small RNA-seq
MeRIP-seq
WGBS
FAIRE-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
STARR-seq
snDrop-seq
DNAme array
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
skeletal muscle myoblast15121
tissue
islet of Langerhans221037612134
brain111121
heart531411
kidney12141
body of pancreas71
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1911
adipocyte71811
cardiomyocytes12
cell line
GM1287856
EndoC_BH122263
Panc11111
H1-hESC8
RCC 7860 HIF1a re-expression41
stem cell
hESC3
mesenchymal stem cell1
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