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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 186ChIP-seq
  • 89ATAC-seq
  • 40total RNA-seq
  • 22DNase-seq
  • 19pCHi-C
  • 17RRBS
  • 8Hi-C
  • 7snATAC-seq
  • 6MeRIP-seq
  • 6WGBS
  • 6single cell RNA-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2STARR-seq
  • 1FAIRE-seq
Assay category
  • 186DNA binding
  • 119DNA accessibility
  • 46Transcription
  • 23DNA methylation
  • 83D chromatin structure
Target of assay
  • 94histone
  • 94histone modification
  • 67transcription factor
  • 47broad histone mark
  • 47narrow histone mark
  • 29control
  • 18RNA binding protein
  • 9chromatin remodeller
  • 7recombinant protein
  • 3nucleotide modification
Date released
  • 68October, 2019
  • 55May, 2020
  • 32June, 2019
  • 30February, 2021
  • 27December, 2018
  • 23November, 2019
  • 22August, 2017
  • 21July, 2019
  • 16January, 2019
  • 16March, 2020
  • 15December, 2017
  • 14August, 2021
  • 14May, 2019
  • 14May, 2021
  • 13November, 2018
  • 7October, 2018
  • 6February, 2023
  • 6November, 2017
  • 6November, 2020
  • 3January, 2021
  • 2December, 2019
  • 1April, 2019
  • 1July, 2018
Available data
  • 278bam
  • 236bigWig
  • 207bed narrowPeak
  • 149bigBed narrowPeak
  • 112fastq
  • 57tsv
  • 41bed broadPeak
  • 41bigBed broadPeak
  • 37bed bed3+
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 14tagAlign
  • 7bed bedgraph
  • 6bedpe bed3+
  • 4hdf5
  • 4hic
  • 3txt
  • 2ibed
  • 1tar
Organism
  • 412Homo sapiens
Biosample type
  • 167primary cell
  • 116cell line
  • 70tissue
  • 56in vitro differentiated cells
  • 3stem cell
Organ
  • liver
  • 88epithelium
  • 63pancreas
  • 56blood
  • 56bodily fluid
  • 42vasculature
  • 39kidney
  • 37blood vessel
  • 25brain
  • 18vein
  • 16heart
  • 13musculature of body
  • 11connective tissue
  • 11embryo
  • 7artery
  • 5limb
  • 4eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 383AMP
  • 23T1D
  • 6HPAP
Genome assembly (visualization)
  • 290hg19
  • 251GRCh38
Lab
  • 372AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
  • 2Bing Ren, UCSD
Audit category:
  • 83inconsistent ontology term
  • 2audit script error
  • 1inconsistent control
Audit category:
  • 8inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • liver
BIOSAMPLE
ASSAY

412 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
RRBS
Hi-C
snATAC-seq
MeRIP-seq
WGBS
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
STARR-seq
FAIRE-seq
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
skeletal muscle myoblast15121
endothelial cell of umbilical vein1611
macrophage11
cell line
GM1287856
EndoC_BH122263
Panc11111
H1-hESC8
RCC 7860 HIF1a re-expression41
tissue
islet of Langerhans1911
body of pancreas7
brain511
thoracic aorta7
heart51
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1191
cardiomyocytes (cardiac muscle cell)12122
adipocyte41
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
Posterior foregut3
stem cell
hESC3
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