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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 459ChIP-seq
Assay category
  • 459DNA binding
Target of assay
  • 914histone
  • 914histone modification
  • 459broad histone mark
  • 454narrow histone mark
  • 235control
  • 176transcription factor
  • 56RNA binding protein
  • 13chromatin remodeller
  • 7recombinant protein
  • 5nucleotide modification
  • 3other context
  • 3other post-translational modification
Date released
  • 90August, 2017
  • 76May, 2021
  • 58May, 2019
  • 52October, 2019
  • 42November, 2017
  • 37April, 2019
  • 20May, 2024
  • 19October, 2018
  • 17September, 2018
  • 10October, 2017
  • 8February, 2018
  • 8June, 2019
  • 7August, 2021
  • 6November, 2019
  • 5December, 2017
  • 4January, 2019
Available data
  • 397bigWig
  • 391bed narrowPeak
  • 349bam
  • 221bigBed narrowPeak
  • 129tagAlign
  • 93fastq
  • 28bed broadPeak
  • 11bed bed3+
  • 8bigBed broadPeak
Organism
  • 455Homo sapiens
Biosample type
  • 278tissue
  • 121primary cell
  • 49in vitro differentiated cells
  • 10cell line
  • 1stem cell
Organ
  • 78pancreas
  • 70brain
  • 57heart
  • 45blood vessel
  • 45vasculature
  • 44connective tissue
  • 44epithelium
  • liver
  • 34limb
  • 20adipose tissue
  • 20musculature of body
  • 16nerve
  • 15kidney
  • 14artery
  • 9vein
  • 4embryo
  • 4spleen
Project
  • 415AMP
  • 44T1D
Genome assembly (visualization)
  • 364GRCh38
  • 341hg19
Lab
  • 365AMP-T2D consortium
  • 74Kyle Gaulton, UCSD
  • 20Patrick T. Ellinor, Broad
Audit category:
  • 14inconsistent ontology term
Audit category:
  • 25missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 2inconsistent assembly
organ_slims!
  • liver
BIOSAMPLE
ASSAY

459 results

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Clear Filters
ChIP-seq
tissue
left cardiac atrium20
subcutaneous abdominal adipose tissue20
tibial nerve16
heart left ventricle15
islet of Langerhans14
primary cell
monocyte44
CD8-positive, alpha-beta T cell20
pancreatic endocrine cell11
endothelial cell of umbilical vein9
pancreatic ductal cell6
in vitro differentiated cells
adipocyte20
embryonic stem cell11
neural progenitor cell7
pancreatic endoderm4
definitive endodermal cell2
cell line
EndoC_BH16
Panc14
stem cell
hESC1
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