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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 914ChIP-seq
Assay category
  • 914DNA binding
Target of assay
  • 914histone
  • 914histone modification
  • 459broad histone mark
  • 454narrow histone mark
  • 235control
  • 176transcription factor
  • 56RNA binding protein
  • 13chromatin remodeller
  • 7recombinant protein
  • 5nucleotide modification
  • 3other context
  • 3other post-translational modification
Date released
  • 191October, 2019
  • 166August, 2017
  • 140May, 2021
  • 92May, 2019
  • 73November, 2017
  • 60April, 2019
  • 35May, 2024
  • 32September, 2018
  • 30October, 2018
  • 19June, 2019
  • 16February, 2018
  • 14August, 2021
  • 14December, 2017
  • 12October, 2017
  • 10November, 2019
  • 7January, 2019
  • 3March, 2020
Available data
  • 786bigWig
  • 770bed narrowPeak
  • 705bam
  • 356bigBed narrowPeak
  • 263tagAlign
  • 185fastq
  • 51bed broadPeak
  • 22bed bed3+
  • 16bigBed broadPeak
  • 1tagAlign bed3+
Organism
  • 908Homo sapiens
Biosample type
  • 558tissue
  • 234primary cell
  • 100in vitro differentiated cells
  • 20cell line
  • 2stem cell
Organ
  • 187brain
  • 151pancreas
  • liver
  • 97heart
  • 93epithelium
  • 78connective tissue
  • 71vasculature
  • 70blood vessel
  • 49limb
  • 33musculature of body
  • 32adipose tissue
  • 30kidney
  • 24nerve
  • 20artery
  • 15vein
  • 12embryo
  • 6spleen
  • 4gonad
  • 4ovary
  • 3eye
  • 1blood
  • 1bodily fluid
  • 1lymph node
  • 1pituitary gland
Project
  • 826AMP
  • 88T1D
Genome assembly (visualization)
  • 734GRCh38
  • 701hg19
Lab
  • 745AMP-T2D consortium
  • 134Kyle Gaulton, UCSD
  • 35Patrick T. Ellinor, Broad
Audit category:
  • 33inconsistent ontology term
Audit category:
  • 53missing controlled_by
Audit category:
  • 19inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • liver
BIOSAMPLE
ASSAY

914 results

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Clear Filters
ChIP-seq
tissue
islet of Langerhans51
left cardiac atrium35
subcutaneous abdominal adipose tissue31
heart left ventricle24
tibial nerve24
primary cell
monocyte85
CD8-positive, alpha-beta T cell30
pancreatic endocrine cell23
endothelial cell of umbilical vein15
pancreatic ductal cell13
in vitro differentiated cells
adipocyte37
embryonic stem cell22
neural progenitor cell14
pancreatic endoderm10
definitive endodermal cell4
cell line
EndoC_BH112
Panc17
GM128781
stem cell
hESC2
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