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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 454ChIP-seq
Assay category
  • 454DNA binding
Target of assay
  • 914histone
  • 914histone modification
  • 459broad histone mark
  • 454narrow histone mark
  • 235control
  • 176transcription factor
  • 56RNA binding protein
  • 13chromatin remodeller
  • 7recombinant protein
  • 5nucleotide modification
  • 3other context
  • 3other post-translational modification
Date released
  • 139October, 2019
  • 75August, 2017
  • 64May, 2021
  • 34May, 2019
  • 31November, 2017
  • 23April, 2019
  • 15May, 2024
  • 15September, 2018
  • 11June, 2019
  • 11October, 2018
  • 9December, 2017
  • 8February, 2018
  • 7August, 2021
  • 4November, 2019
  • 3January, 2019
  • 3March, 2020
  • 2October, 2017
Available data
  • 388bigWig
  • 378bed narrowPeak
  • 355bam
  • 135bigBed narrowPeak
  • 134tagAlign
  • 91fastq
  • 23bed broadPeak
  • 11bed bed3+
  • 8bigBed broadPeak
  • 1tagAlign bed3+
Organism
  • 452Homo sapiens
Biosample type
  • 280tissue
  • 113primary cell
  • 50in vitro differentiated cells
  • 10cell line
  • 1stem cell
Organ
  • 117brain
  • 73pancreas
  • liver
  • 49epithelium
  • 40heart
  • 33connective tissue
  • 26vasculature
  • 25blood vessel
  • 15kidney
  • 15limb
  • 13musculature of body
  • 12adipose tissue
  • 8embryo
  • 8nerve
  • 6artery
  • 6vein
  • 4gonad
  • 4ovary
  • 3eye
  • 2spleen
  • 1blood
  • 1bodily fluid
  • 1lymph node
  • 1pituitary gland
Project
  • 410AMP
  • 44T1D
Genome assembly (visualization)
  • 369GRCh38
  • 359hg19
Lab
  • 379AMP-T2D consortium
  • 60Kyle Gaulton, UCSD
  • 15Patrick T. Ellinor, Broad
Audit category:
  • 19inconsistent ontology term
Audit category:
  • 28missing controlled_by
Audit category:
  • 10inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • liver
BIOSAMPLE
ASSAY

454 results

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Clear Filters
ChIP-seq
tissue
islet of Langerhans37
left cardiac atrium15
subcutaneous abdominal adipose tissue11
kidney10
heart left ventricle9
primary cell
monocyte41
pancreatic endocrine cell12
CD8-positive, alpha-beta T cell10
pancreatic ductal cell7
endothelial cell of umbilical vein6
in vitro differentiated cells
adipocyte16
embryonic stem cell11
neural progenitor cell7
pancreatic endoderm6
Hepatic endoderm2
cell line
EndoC_BH16
Panc13
GM128781
stem cell
hESC1
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