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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1062total RNA-seq
  • 286single cell RNA-seq
  • 87RNA microarray
  • 16small RNA-seq
  • 5STARR-seq
  • 3snDrop-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snATAC-seq
Assay category
  • 1368Transcription
  • 1DNA accessibility
Date released
  • 623February, 2021
  • 185August, 2021
  • 145May, 2020
  • 141May, 2021
  • 54May, 2022
  • 52February, 2023
  • 47September, 2023
  • 45July, 2019
  • 40September, 2020
  • 26October, 2019
  • 24February, 2020
  • 15February, 2018
  • 11July, 2018
  • 10April, 2018
  • 10April, 2020
  • 10December, 2019
  • 10March, 2020
  • 4March, 2023
  • 4May, 2023
  • 4November, 2020
  • 2June, 2018
  • 1November, 2018
  • 1October, 2022
  • 1September, 2018
Available data
  • 1070tsv
  • 925bigWig
  • 923bam
  • 151txt
  • 113fastq
  • 52zippedFastqFolder
  • 8csv
  • 2bed bed3+
Organism
  • 1458Homo sapiens
Biosample type
  • 1023tissue
  • 219primary cell
  • 138in vitro differentiated cells
  • 83cell line
  • 2stem cell
Organ
  • pancreas
  • 476connective tissue
  • 401adipose tissue
  • 204epithelium
  • 190liver
  • 162heart
  • 146bone element
  • 128kidney
  • 65blood vessel
  • 65vasculature
  • 56artery
  • 21brain
  • 19eye
  • 14embryo
  • 10lung
  • 8musculature of body
  • 4skeleton
  • 3limb
  • 1nerve
  • 1spinal cord
Project
  • 1229AMP
  • 124HPAP
  • 51T1D
  • 47KPMP
  • 10LungMap
  • 4community
Genome assembly (visualization)
  • 926hg19
  • 924GRCh38
Lab
  • 1128AMP-T2D consortium
  • 124Klaus Kaestner, Upenn
  • 60Katalin Susztak, Upenn
  • 58Kyle Gaulton, UCSD
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 10Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 182inconsistent ontology term
  • 9audit script error
organ_slims!
  • pancreas
replicates.library.nucleic_acid_term_name!
  • DNA
BIOSAMPLE
ASSAY

1465 results

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Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
small RNA-seq
STARR-seq
snDrop-seq
CRISPR RNA-seq
CRISPRi RNA-seq
MPRA
shRNA RNA-seq
siRNA RNA-seq
snATAC-seq
tissue
adipose tissue382
liver16711
kidney4964
bone element84
bone tissue58
primary cell
Langerhans cell85
monocyte52
exocrine cell39
pancreatic cell9
mesenchymal cell6
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
HepG292
H1-hESC8
EndoC-BH111
HEK293T2
stem cell
SB Ad3.111
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