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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1653ChIP-seq
  • 379ATAC-seq
  • 204DNase-seq
  • 73snATAC-seq
  • 68total RNA-seq
  • 56pCHi-C
  • 25Hi-C
  • 24WGBS
  • 19RRBS
  • 5GRO-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 3single cell RNA-seq
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1RNA microarray
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1653DNA binding
  • 659DNA accessibility
  • 75Transcription
  • 44DNA methylation
  • 253D chromatin structure
  • 1DNA sequencing
Target of assay
  • 866histone modification
  • 865histone
  • 495transcription factor
  • 441narrow histone mark
  • 423broad histone mark
  • 290control
  • 105RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 270October, 2019
  • 223August, 2017
  • 214June, 2019
  • 197May, 2021
  • 196May, 2020
  • 131August, 2021
  • 118May, 2019
  • 97February, 2023
  • 94December, 2017
  • 80April, 2019
  • 80November, 2018
  • 60February, 2021
  • 57July, 2019
  • 42May, 2022
  • 40March, 2020
  • 40May, 2024
  • 35December, 2018
  • 30January, 2019
  • 24February, 2018
  • 23October, 2018
  • 18October, 2017
  • 11May, 2023
  • 10April, 2020
  • 8January, 2018
  • 8January, 2021
  • 6November, 2019
  • 5March, 2023
  • 2November, 2020
  • 1August, 2018
  • 1October, 2022
Available data
  • 1780bam
  • 1621bigWig
  • 1603bed narrowPeak
  • 951bigBed narrowPeak
  • 774fastq
  • 379tagAlign
  • 301bed broadPeak
  • 278bigBed broadPeak
  • 242bed bed3+
  • 113tsv
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 21zippedFastqFolder
  • 16bedpe bed3+
  • 16hic
  • 12bed bed3
  • 7bed bedgraph
  • 5txt
  • 4hdf5
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2520Homo sapiens
Biosample type
  • 1251tissue
  • 523primary cell
  • 490cell line
  • 253in vitro differentiated cells
  • 10stem cell
Organ
  • 601liver
  • pancreas
  • 321epithelium
  • 265brain
  • 231heart
  • 226kidney
  • 209connective tissue
  • 171vasculature
  • 165blood vessel
  • 119limb
  • 91adipose tissue
  • 88musculature of body
  • 85artery
  • 69blood
  • 69bodily fluid
  • 42eye
  • 42nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 13bone element
  • 12skeleton
  • 11lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 2305AMP
  • 159T1D
  • 48HPAP
  • 10LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1629hg19
  • 1568GRCh38
  • 5hg18
Lab
  • 2061AMP-T2D consortium
  • 234Kyle Gaulton, UCSD
  • 82Katalin Susztak, Upenn
  • 48Klaus Kaestner, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 10Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 1ITG
Audit category:
  • 90inconsistent ontology term
  • 29audit script error
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 35missing controlled_by
Audit category:
  • 47inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
organ_slims!
  • pancreas
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

2527 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
total RNA-seq
pCHi-C
Hi-C
WGBS
RRBS
GRO-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
single cell RNA-seq
Capture-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
MPRA
RNA microarray
...and 3 more
tissue
liver1452021131
kidney2775136111
heart left ventricle35231141
coronary artery5362
tibial nerve35124
primary cell
monocyte8515211
Langerhans cell48
CD8-positive, alpha-beta T cell33221
naive thymus-derived CD4-positive, alpha-beta T cell2221
CD4-positive, alpha-beta memory T cell22
cell line
HepG237815221
GM12878601
smooth muscle cell of the coronary artery68
EndoC_BH132
RCC 7860 HIF1a re-expression4
in vitro differentiated cells
adipocyte67811
embryonic stem cell4061
neural progenitor cell2110
pancreatic endoderm181
hepatocyte15
stem cell
hESC31
SB Ad3.111
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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