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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 178total RNA-seq
  • 158ChIP-seq
  • 87ATAC-seq
  • 27pCHi-C
  • 26DNase-seq
  • 19single cell RNA-seq
  • 11small RNA-seq
  • 3Hi-C
  • 3snATAC-seq
  • 2Capture-C
  • 2FAIRE-seq
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 208Transcription
  • 158DNA binding
  • 118DNA accessibility
  • 33D chromatin structure
  • 1DNA methylation
Target of assay
  • 119histone
  • 119histone modification
  • 82narrow histone mark
  • 37broad histone mark
  • 26transcription factor
  • 13control
  • 7RNA binding protein
Date released
  • 134May, 2021
  • 88May, 2020
  • 50October, 2019
  • 46August, 2021
  • 36July, 2019
  • 30June, 2019
  • 29February, 2023
  • 24February, 2020
  • 23March, 2020
  • 14August, 2017
  • 11February, 2021
  • 8July, 2018
  • 6April, 2018
  • 6October, 2017
  • 3December, 2017
  • 2January, 2021
  • 2May, 2022
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1November, 2018
  • 1November, 2019
  • 1September, 2018
Available data
  • 384bam
  • 368bigWig
  • 225tsv
  • 159bed narrowPeak
  • 116tagAlign
  • 48bed bed3+
  • 37bigBed narrowPeak
  • 35fastq
  • 24bed broadPeak
  • 24bigBed broadPeak
  • 6bed bed3
  • 5txt
  • 3hic
  • 2bedpe bed3+
  • 2csv
  • 1tagAlign bed3+
Organism
  • 519Homo sapiens
Biosample type
  • 235primary cell
  • 171tissue
  • 112in vitro differentiated cells
  • 1stem cell
Organ
  • pancreas
  • 81epithelium
  • 71brain
  • 57connective tissue
  • 25heart
  • 19kidney
  • 17adipose tissue
  • 16liver
  • 9musculature of body
  • 8bone element
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 402AMP
  • 116T1D
  • 1ITG
Genome assembly (visualization)
  • 386hg19
  • 327GRCh38
Lab
  • 378AMP-T2D consortium
  • 136Kyle Gaulton, UCSD
  • 4Struan F.A. Grant, CHOP
  • 1ITG
Audit category:
  • 47inconsistent ontology term
  • 1audit script error
Audit category:
  • 4missing controlled_by
Audit category:
  • 4inconsistent control read length
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

519 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
DNase-seq
single cell RNA-seq
small RNA-seq
Hi-C
snATAC-seq
Capture-C
FAIRE-seq
snDrop-seq
DNAme array
primary cell
monocyte264721
mesenchymal stem cell7
pancreatic cell6
CD8-positive, alpha-beta T cell221
B cell22
tissue
liver26111
brain612
heart24111
frontal cortex2211
cerebellum (Hemisphere)1111
in vitro differentiated cells
neural progenitor cell72110
embryonic stem cell51141
adipocyte1741
cardiomyocytes12
induced pluripotent stem cell9
stem cell
mesenchymal stem cell1
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