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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 553ChIP-seq
  • 69ATAC-seq
  • 49total RNA-seq
  • 21DNase-seq
  • 21pCHi-C
  • 17RRBS
  • 9Hi-C
  • 6single cell RNA-seq
  • 4STARR-seq
  • 4snATAC-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2WGBS
  • 1FAIRE-seq
Assay category
  • 553DNA binding
  • 95DNA accessibility
  • 55Transcription
  • 19DNA methylation
  • 93D chromatin structure
Target of assay
  • 387transcription factor
  • 112histone
  • 112histone modification
  • 88recombinant protein
  • 73RNA binding protein
  • 57broad histone mark
  • 55narrow histone mark
  • 52control
  • 32chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 62November, 2018
  • 61October, 2019
  • 59December, 2017
  • 56May, 2020
  • 32June, 2019
  • 28December, 2018
  • 26February, 2021
  • 22August, 2017
  • 22July, 2019
  • 21January, 2019
  • 18August, 2021
  • 14May, 2019
  • 13May, 2021
  • 11March, 2020
  • 7December, 2019
  • 6February, 2023
  • 4November, 2019
  • 1April, 2019
  • 1July, 2018
Available data
  • 633bam
  • 590bigWig
  • 520bed narrowPeak
  • 487fastq
  • 475bigBed narrowPeak
  • 98bed broadPeak
  • 98bigBed broadPeak
  • 60tsv
  • 37bed bed3+
  • 26tagAlign
  • 18bed bedMethyl
  • 18bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 4hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 759Homo sapiens
Biosample type
  • 438cell line
  • 167primary cell
  • 80tissue
  • 71in vitro differentiated cells
  • 3stem cell
Organ
  • 410liver
  • 88epithelium
  • pancreas
  • 56blood
  • 56bodily fluid
  • 42vasculature
  • 39kidney
  • 37blood vessel
  • 25brain
  • 18vein
  • 16heart
  • 13musculature of body
  • 11connective tissue
  • 11embryo
  • 7artery
  • 5limb
  • 4eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 743AMP
  • 16T1D
Genome assembly (visualization)
  • 622hg19
  • 539GRCh38
Lab
  • 730AMP-T2D consortium
  • 16Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 71inconsistent ontology term
  • 28inconsistent control
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 33inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

759 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
RRBS
Hi-C
single cell RNA-seq
STARR-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
WGBS
FAIRE-seq
cell line
HepG2335152121
GM1287856
H1-hESC8
RCC 7860 HIF1a re-expression41
RCC 7860 vector311
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
skeletal muscle myoblast15121
endothelial cell of umbilical vein1611
macrophage11
tissue
liver3611
brain511
thoracic aorta7
heart51
kidney14
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1191
hepatocyte15
cardiomyocytes (cardiac muscle cell)12122
adipocyte41
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
stem cell
hESC3
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