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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 942ChIP-seq
  • 903total RNA-seq
  • 264single cell RNA-seq
  • 223ATAC-seq
  • 157DNase-seq
  • 87RNA microarray
  • 66snATAC-seq
  • 22WGBS
  • 13Hi-C
  • 8pCHi-C
  • 5GRO-seq
  • 5small RNA-seq
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snDrop-seq
  • 1whole genome sequencing assay
Assay category
  • 1176Transcription
  • 942DNA binding
  • 446DNA accessibility
  • 24DNA methylation
  • 133D chromatin structure
  • 1DNA sequencing
Target of assay
  • 635histone modification
  • 634histone
  • 329broad histone mark
  • 304narrow histone mark
  • 225control
  • 82transcription factor
  • 25RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 1recombinant protein
Date released
  • 646February, 2021
  • 251August, 2021
  • 197May, 2020
  • 191May, 2021
  • 187August, 2017
  • 185October, 2019
  • 152June, 2019
  • 114February, 2023
  • 111November, 2017
  • 104May, 2019
  • 94May, 2022
  • 78April, 2019
  • 47September, 2023
  • 44July, 2019
  • 40May, 2024
  • 40September, 2020
  • 38February, 2018
  • 32December, 2017
  • 23October, 2018
  • 19April, 2020
  • 18November, 2018
  • 16March, 2020
  • 15May, 2023
  • 12October, 2017
  • 9January, 2019
  • 8January, 2018
  • 7December, 2018
  • 6January, 2021
  • 6November, 2020
  • 4April, 2018
  • 4March, 2023
  • 3December, 2019
  • 2July, 2018
  • 1August, 2018
  • 1June, 2018
  • 1November, 2019
  • 1October, 2022
Available data
  • 1686bam
  • 1588bigWig
  • 924bed narrowPeak
  • 898tsv
  • 439bigBed narrowPeak
  • 365fastq
  • 237tagAlign
  • 179bed broadPeak
  • 159bed bed3+
  • 156bigBed broadPeak
  • 147txt
  • 73zippedFastqFolder
  • 64xls
  • 12bed bedMethyl
  • 12bigBed bedMethyl
  • 9hic
  • 8bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1vcf
Organism
  • 2700Homo sapiens
Biosample type
  • 2021tissue
  • 340primary cell
  • 208in vitro differentiated cells
  • 132cell line
  • 6stem cell
Organ
  • pancreas
  • 616connective tissue
  • 474adipose tissue
  • 365liver
  • 355epithelium
  • 352heart
  • 296kidney
  • 190brain
  • 187vasculature
  • 186blood vessel
  • 150bone element
  • 130artery
  • 114limb
  • 74musculature of body
  • 54eye
  • 42nerve
  • 24embryo
  • 24spleen
  • 19lung
  • 18ureter
  • 11blood
  • 11bodily fluid
  • 8skeleton
  • 4gonad
  • 4ovary
  • 3vein
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 2387AMP
  • 172HPAP
  • 78T1D
  • 47KPMP
  • 19LungMap
  • 4community
Genome assembly (visualization)
  • 1626GRCh38
  • 1547hg19
  • 5hg18
Lab
  • 2079AMP-T2D consortium
  • 172Klaus Kaestner, Upenn
  • 140Kyle Gaulton, UCSD
  • 138Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 28Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 154inconsistent ontology term
  • 35audit script error
Audit category:
  • 19missing controlled_by
Audit category:
  • 10inconsistent control read length
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

2707 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
Hi-C
pCHi-C
GRO-seq
small RNA-seq
HiChIP
RRBS
CRISPR RNA-seq
CRISPRi RNA-seq
MPRA
STARR-seq
shRNA RNA-seq
siRNA RNA-seq
...and 2 more
tissue
adipose tissue238213
liver103164201311
kidney264964751121
bone element84
heart left ventricle343182241
primary cell
Langerhans cell8548
monocyte382813
exocrine cell39
CD8-positive, alpha-beta T cell332
epithelial cell of proximal tubule8
in vitro differentiated cells
adipocyte604
cardiomyocytes347
embryonic stem cell2921
pancreatic endoderm1541
definitive endodermal cell521
cell line
smooth muscle cell of the coronary artery4528
HepG24391
GM1287841
EndoC-BH111
EndoC_BH12
stem cell
SB Ad3.111
hESC1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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