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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 423ChIP-seq
Assay category
  • 423DNA binding
Target of assay
  • 866histone modification
  • 865histone
  • 495transcription factor
  • 441narrow histone mark
  • 423broad histone mark
  • 290control
  • 105RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 77August, 2017
  • 76May, 2021
  • 58May, 2019
  • 51October, 2019
  • 50November, 2017
  • 37April, 2019
  • 20May, 2024
  • 15December, 2017
  • 10October, 2017
  • 9August, 2021
  • 8February, 2018
  • 8June, 2019
  • 4January, 2019
Available data
  • 354bigWig
  • 352bed narrowPeak
  • 308bam
  • 212bigBed narrowPeak
  • 139tagAlign
  • 66fastq
  • 28bed broadPeak
  • 16bigBed broadPeak
  • 6bed bed3+
Organism
  • 423Homo sapiens
Biosample type
  • 262tissue
  • 95primary cell
  • 56in vitro differentiated cells
  • 9cell line
  • 1stem cell
Organ
  • pancreas
  • 70brain
  • 57heart
  • 45blood vessel
  • 45vasculature
  • 44connective tissue
  • 44epithelium
  • 42liver
  • 34limb
  • 20adipose tissue
  • 20musculature of body
  • 16nerve
  • 15kidney
  • 14artery
  • 9vein
  • 4embryo
  • 4spleen
Project
  • 379AMP
  • 44T1D
Genome assembly (visualization)
  • 323GRCh38
  • 298hg19
Lab
  • 328AMP-T2D consortium
  • 74Kyle Gaulton, UCSD
  • 20Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
Audit category:
  • 8inconsistent ontology term
Audit category:
  • 3missing controlled_by
Audit category:
  • 12inconsistent control read length
  • 1inconsistent assembly
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

423 results

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Clear Filters
ChIP-seq
tissue
liver22
left cardiac atrium20
subcutaneous abdominal adipose tissue20
tibial nerve16
heart left ventricle15
primary cell
monocyte44
CD8-positive, alpha-beta T cell20
endothelial cell of umbilical vein9
skeletal muscle myoblast6
mesenchymal stem cell4
in vitro differentiated cells
adipocyte20
embryonic stem cell11
hepatocyte7
neural progenitor cell7
pancreatic endoderm4
cell line
HepG29
stem cell
hESC1
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