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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 865ChIP-seq
Assay category
  • 865DNA binding
Target of assay
  • 866histone modification
  • 865histone
  • 495transcription factor
  • 441narrow histone mark
  • 423broad histone mark
  • 290control
  • 105RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 189October, 2019
  • 138May, 2021
  • 132August, 2017
  • 91May, 2019
  • 88November, 2017
  • 60April, 2019
  • 35May, 2024
  • 31December, 2017
  • 27May, 2020
  • 20August, 2021
  • 19June, 2019
  • 16February, 2018
  • 12October, 2017
  • 7January, 2019
Available data
  • 726bigWig
  • 723bed narrowPeak
  • 647bam
  • 342bigBed narrowPeak
  • 306tagAlign
  • 129fastq
  • 53bed broadPeak
  • 30bigBed broadPeak
  • 13bed bed3+
  • 1tagAlign bed3+
Organism
  • 865Homo sapiens
Biosample type
  • 554tissue
  • 179primary cell
  • 111in vitro differentiated cells
  • 19cell line
  • 2stem cell
Organ
  • 187brain
  • pancreas
  • 102liver
  • 97heart
  • 93epithelium
  • 78connective tissue
  • 71vasculature
  • 70blood vessel
  • 49limb
  • 33musculature of body
  • 32adipose tissue
  • 30kidney
  • 24nerve
  • 20artery
  • 15vein
  • 12embryo
  • 6spleen
  • 4gonad
  • 4ovary
  • 3eye
  • 1blood
  • 1bodily fluid
  • 1lymph node
  • 1pituitary gland
Project
  • 781AMP
  • 84T1D
Genome assembly (visualization)
  • 667GRCh38
  • 641hg19
Lab
  • 693AMP-T2D consortium
  • 134Kyle Gaulton, UCSD
  • 35Patrick T. Ellinor, Broad
  • 3Bing Ren, UCSD
Audit category:
  • 21inconsistent ontology term
Audit category:
  • 6missing controlled_by
Audit category:
  • 22inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

865 results

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Clear Filters
ChIP-seq
tissue
liver64
left cardiac atrium35
subcutaneous abdominal adipose tissue31
heart left ventricle24
tibial nerve24
primary cell
monocyte85
CD8-positive, alpha-beta T cell30
endothelial cell of umbilical vein15
skeletal muscle myoblast12
epithelial cell of proximal tubule7
in vitro differentiated cells
adipocyte37
embryonic stem cell22
neural progenitor cell14
hepatocyte12
pancreatic endoderm10
cell line
HepG218
GM128781
stem cell
hESC2
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