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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 441ChIP-seq
Assay category
  • 441DNA binding
Target of assay
  • 866histone modification
  • 865histone
  • 495transcription factor
  • 441narrow histone mark
  • 423broad histone mark
  • 290control
  • 105RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 138October, 2019
  • 62May, 2021
  • 54August, 2017
  • 38November, 2017
  • 33May, 2019
  • 27May, 2020
  • 23April, 2019
  • 16December, 2017
  • 15May, 2024
  • 11August, 2021
  • 11June, 2019
  • 8February, 2018
  • 3January, 2019
  • 2October, 2017
Available data
  • 371bigWig
  • 370bed narrowPeak
  • 338bam
  • 167tagAlign
  • 130bigBed narrowPeak
  • 62fastq
  • 25bed broadPeak
  • 14bigBed broadPeak
  • 7bed bed3+
  • 1tagAlign bed3+
Organism
  • 441Homo sapiens
Biosample type
  • 292tissue
  • 84primary cell
  • 54in vitro differentiated cells
  • 10cell line
  • 1stem cell
Organ
  • 117brain
  • pancreas
  • 60liver
  • 49epithelium
  • 40heart
  • 33connective tissue
  • 26vasculature
  • 25blood vessel
  • 15kidney
  • 15limb
  • 13musculature of body
  • 12adipose tissue
  • 8embryo
  • 8nerve
  • 6artery
  • 6vein
  • 4gonad
  • 4ovary
  • 3eye
  • 2spleen
  • 1blood
  • 1bodily fluid
  • 1lymph node
  • 1pituitary gland
Project
  • 401AMP
  • 40T1D
Genome assembly (visualization)
  • 343GRCh38
  • 342hg19
Lab
  • 364AMP-T2D consortium
  • 60Kyle Gaulton, UCSD
  • 15Patrick T. Ellinor, Broad
  • 2Bing Ren, UCSD
Audit category:
  • 13inconsistent ontology term
Audit category:
  • 3missing controlled_by
Audit category:
  • 10inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

441 results

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Clear Filters
ChIP-seq
tissue
liver42
islet of Langerhans21
left cardiac atrium15
subcutaneous abdominal adipose tissue11
kidney10
primary cell
monocyte41
CD8-positive, alpha-beta T cell10
endothelial cell of umbilical vein6
skeletal muscle myoblast6
epithelial cell of proximal tubule4
in vitro differentiated cells
adipocyte16
embryonic stem cell11
neural progenitor cell7
pancreatic endoderm6
hepatocyte5
cell line
HepG29
GM128781
stem cell
hESC1
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