Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 495ChIP-seq
Assay category
  • 495DNA binding
Target of assay
  • 866histone modification
  • 865histone
  • 495transcription factor
  • 441narrow histone mark
  • 423broad histone mark
  • 290control
  • 105RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 244November, 2017
  • 64November, 2018
  • 42December, 2017
  • 40August, 2017
  • 28December, 2018
  • 15May, 2021
  • 14January, 2019
  • 11August, 2021
  • 7October, 2019
  • 6April, 2019
  • 5February, 2021
  • 5May, 2019
  • 5May, 2024
  • 5October, 2018
  • 4June, 2019
Available data
  • 477bigWig
  • 466bam
  • 456bed narrowPeak
  • 437fastq
  • 395bigBed narrowPeak
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 12bed bed3+
  • 8tagAlign
  • 3tar
Organism
  • 495Homo sapiens
Biosample type
  • 360cell line
  • 77tissue
  • 48in vitro differentiated cells
  • 10primary cell
Organ
  • 338liver
  • 51blood
  • 51bodily fluid
  • 40connective tissue
  • pancreas
  • 17adipose tissue
  • 17heart
  • 10kidney
  • 9epithelium
  • 9vasculature
  • 8blood vessel
  • 6spleen
  • 5artery
  • 3brain
  • 3embryo
  • 1eye
Project
  • 495AMP
Genome assembly (visualization)
  • 468hg19
  • 429GRCh38
Lab
  • 467AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 28inconsistent control
  • 13inconsistent ontology term
Audit category:
  • 29missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 8inconsistent control run_type
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

495 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2297
GM1287851
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
tissue
liver37
white adipose tissue12
spleen6
heart left ventricle5
left cardiac atrium5
in vitro differentiated cells
adipocyte22
embryonic stem cell12
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac fibroblast1
cardiac muscle cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego