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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 558ChIP-seq
  • 90ATAC-seq
  • 51total RNA-seq
  • 21DNase-seq
  • 21pCHi-C
  • 19RRBS
  • 10Hi-C
  • 8WGBS
  • 7snATAC-seq
  • 6MeRIP-seq
  • 6single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
Assay category
  • 558DNA binding
  • 118DNA accessibility
  • 57Transcription
  • 27DNA methylation
  • 103D chromatin structure
Target of assay
  • 387transcription factor
  • 113histone
  • 113histone modification
  • 88recombinant protein
  • 73RNA binding protein
  • 59control
  • 57narrow histone mark
  • 56broad histone mark
  • 32chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 62November, 2018
  • 59December, 2017
  • 56May, 2020
  • 56October, 2019
  • 32February, 2021
  • 32June, 2019
  • 28December, 2018
  • 24July, 2019
  • 23August, 2017
  • 23November, 2019
  • 21January, 2019
  • 18August, 2021
  • 16March, 2020
  • 14May, 2019
  • 14May, 2021
  • 7December, 2019
  • 7October, 2018
  • 6February, 2023
  • 6November, 2020
  • 3January, 2021
  • 1April, 2019
  • 1July, 2018
Available data
  • 658bam
  • 597bigWig
  • 543bed narrowPeak
  • 501fastq
  • 477bigBed narrowPeak
  • 96bed broadPeak
  • 96bigBed broadPeak
  • 69tsv
  • 38bed bed3+
  • 26tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 3tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 804Homo sapiens
Biosample type
  • 463cell line
  • 156primary cell
  • 111tissue
  • 71in vitro differentiated cells
  • 3stem cell
Organ
  • 410liver
  • 88epithelium
  • 63pancreas
  • 56blood
  • 56bodily fluid
  • 42vasculature
  • 39kidney
  • 37blood vessel
  • 25brain
  • vein
  • 16heart
  • 13musculature of body
  • 11connective tissue
  • 11embryo
  • 7artery
  • 5limb
  • 4eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 775AMP
  • 23T1D
  • 6HPAP
Genome assembly (visualization)
  • 650hg19
  • 566GRCh38
Lab
  • 760AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 83inconsistent ontology term
  • 28inconsistent control
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 34inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • vein
BIOSAMPLE
ASSAY

804 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
RRBS
Hi-C
WGBS
snATAC-seq
MeRIP-seq
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
cell line
HepG2335152112
GM1287856
EndoC_BH122263
Panc11111
H1-hESC8
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
skeletal muscle myoblast15121
macrophage11
skeletal muscle satellite cell8
tissue
liver3611
islet of Langerhans1911
body of pancreas7
brain511
thoracic aorta7
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1191
hepatocyte15
cardiomyocytes (cardiac muscle cell)12122
adipocyte41
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
stem cell
hESC3
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