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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
405
total RNA-seq
38
DNase-seq
17
ChIP-seq
14
ATAC-seq
7
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
1
RNA microarray
Assay category
408
Transcription
52
DNA accessibility
17
DNA binding
7
DNA methylation
4
3D chromatin structure
Target of assay
81
histone
histone modification
54
broad histone mark
control
27
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
392
February, 2021
33
June, 2019
19
August, 2017
17
July, 2019
11
October, 2019
5
February, 2020
5
October, 2018
2
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
471
bam
466
bigWig
409
tsv
55
bed narrowPeak
45
bigBed narrowPeak
42
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
24
fastq
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
491
Homo sapiens
Biosample type
489
tissue
2
primary cell
1
in vitro differentiated cells
Organ
742
pancreas
580
liver
571
connective tissue
435
adipose tissue
401
epithelium
312
kidney
276
heart
159
bone element
143
vasculature
139
blood vessel
112
artery
68
brain
62
blood
62
bodily fluid
57
eye
57
musculature of body
56
limb
20
lung
18
embryo
18
ureter
16
skeleton
11
spleen
8
nerve
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
492
AMP
Genome assembly (visualization)
472
GRCh38
472
hg19
Lab
492
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
control
histone modification
BIOSAMPLE
ASSAY
492 results
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total RNA-seq
DNase-seq
ChIP-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
3
3
1
muscle of arm
17
muscle of leg
13
1
omental fat pad
5
2
3
1
1
subcutaneous adipose tissue
7
2
1
1
1
+ See 16 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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