Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
157
candidate regulatory elements
155
target gene predictions
81
chromatin state
34
accessible chromatin
20
gene expression
19
eQTL
12
binding sites
11
histone modifications
6
Fine-mapped variants
6
variant allelic effects
2
differential activity
Date released
224
September, 2022
112
February, 2021
59
February, 2024
23
November, 2021
15
June, 2020
12
May, 2021
11
March, 2020
9
January, 2022
7
March, 2024
6
August, 2017
6
August, 2021
5
February, 2020
4
January, 2020
3
May, 2020
2
October, 2022
2
September, 2018
1
January, 2018
1
November, 2022
Available data
383
bed bed3+
75
bed bed9
29
tsv
18
bigWig
1
bigBed bed9
Organism
503
Homo sapiens
Biosample type
361
tissue
106
cell line
35
primary cell
1
in vitro differentiated cells
Organ
959
epithelium
652
kidney
468
connective tissue
466
brain
375
musculature of body
311
lung
289
intestine
277
pancreas
269
vasculature
257
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
158
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphatic vessel
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
480
AMP
23
ENCODE
Genome assembly (visualization)
470
hg19
172
GRCh38
2
hg18
BIOSAMPLE
TYPE
503 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
gene expression
eQTL
binding sites
histone modifications
Fine-mapped variants
variant allelic effects
differential activity
tissue
small intestine
29
17
15
1
1
large intestine
27
14
13
1
1
adipose tissue
7
8
6
2
3
4
1
1
sigmoid colon
10
7
5
1
ovary
8
6
4
1
1
1
+ See 30 more…
cell line
HeLa-S3
5
55
3
1
HT-29
2
2
1
1
1
1
SW480
2
1
1
1
1
1
HCT116
2
3
1
ACC112
2
1
1
+ See 8 more…
primary cell
colon epithelial cell
3
3
enterocyte
3
3
enteric smooth muscle cell
2
2
fibroblast of gingiva
2
1
1
Ishikawa
1
1
1
+ See 7 more…
in vitro differentiated cells
white adipose cell
1
See all biosamples
Download