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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
72
ChIP-seq
22
DNase-seq
7
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
406
Transcription
72
DNA binding
29
DNA accessibility
6
DNA methylation
Target of assay
56
histone
56
histone modification
broad histone mark
35
control
20
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
37
August, 2017
27
October, 2019
23
October, 2018
19
June, 2019
12
July, 2019
3
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
486
bam
458
bigWig
406
tsv
44
fastq
42
bed narrowPeak
38
bigBed narrowPeak
26
bed bed3+
23
bed broadPeak
22
bigBed broadPeak
4
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
515
Homo sapiens
Biosample type
513
tissue
2
primary cell
1
in vitro differentiated cells
Organ
868
pancreas
749
liver
640
connective tissue
480
epithelium
471
adipose tissue
339
kidney
336
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
516
AMP
Genome assembly (visualization)
459
hg19
457
GRCh38
Lab
516
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
516 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
tibial nerve
5
19
2
1
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
2
1
1
subcutaneous abdominal adipose tissue
16
3
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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