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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 73ChIP-seq
  • 6ATAC-seq
  • 6WGBS
  • 2DNase-seq
  • 2pCHi-C
  • 1RNA microarray
  • 1total RNA-seq
Assay category
  • 73DNA binding
  • 8DNA accessibility
  • 6DNA methylation
  • 1Transcription
Target of assay
  • 32histone
  • 32histone modification
  • 24control
  • 20broad histone mark
  • 17transcription factor
  • 12narrow histone mark
  • 5RNA binding protein
Date released
  • 57August, 2017
  • 23October, 2018
  • 1August, 2018
  • 1August, 2021
  • 1February, 2023
  • 1January, 2018
  • 1July, 2019
  • 1June, 2019
  • 1March, 2020
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
  • 1October, 2019
Available data
  • 45bam
  • 44fastq
  • 28bigWig
  • 13bed narrowPeak
  • 10bigBed narrowPeak
  • 8tagAlign
  • 6bed bed3+
  • 3bed broadPeak
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2bigBed broadPeak
  • 2tsv
  • 1bedpe bed3+
Organism
  • 90Homo sapiens
Biosample type
  • 89tissue
  • 1in vitro differentiated cells
  • 1primary cell
Organ
  • 601liver
  • 457pancreas
  • 321epithelium
  • 265brain
  • 231heart
  • 226kidney
  • 209connective tissue
  • 171vasculature
  • 165blood vessel
  • 119limb
  • 91adipose tissue
  • 88musculature of body
  • 85artery
  • 69blood
  • 69bodily fluid
  • 42eye
  • 42nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 13bone element
  • 12skeleton
  • 11lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 91AMP
Genome assembly (visualization)
  • 28hg19
  • 26GRCh38
Lab
  • 91AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 12missing controlled_by
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

91 results

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Clear Filters
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
RNA microarray
total RNA-seq
tissue
subcutaneous abdominal adipose tissue363
omental fat pad1112
subcutaneous adipose tissue1211
white adipose tissue12
adipose tissue2331
in vitro differentiated cells
white fat cell1
primary cell
mesenchymal stem cell of adipose1
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