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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 390total RNA-seq
  • 69ChIP-seq
  • 6WGBS
  • 3ATAC-seq
  • 2DNase-seq
  • 2small RNA-seq
  • 1RNA microarray
  • 1pCHi-C
Assay category
  • 392Transcription
  • 69DNA binding
  • 6DNA methylation
  • 5DNA accessibility
Target of assay
  • 32histone
  • 32histone modification
  • 24control
  • 20broad histone mark
  • 13transcription factor
  • 12narrow histone mark
  • 5RNA binding protein
Date released
  • 381February, 2021
  • 53August, 2017
  • 23October, 2018
  • 10July, 2019
  • 1August, 2018
  • 1August, 2021
  • 1January, 2018
  • 1June, 2019
  • 1May, 2023
  • 1November, 2018
  • 1October, 2017
Available data
  • 430bam
  • 413bigWig
  • 391tsv
  • 40fastq
  • 11bed narrowPeak
  • 9bigBed narrowPeak
  • 8tagAlign
  • 3bed broadPeak
  • 2bed bed3+
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2bigBed broadPeak
  • 1bedpe bed3+
Organism
  • 473Homo sapiens
Biosample type
  • 473tissue
  • 1in vitro differentiated cells
Organ
  • 808pancreas
  • 775liver
  • 627connective tissue
  • 474adipose tissue
  • 443epithelium
  • 368heart
  • 335kidney
  • 229vasculature
  • 223blood vessel
  • 215brain
  • 151bone element
  • 137artery
  • 119limb
  • 87musculature of body
  • 67blood
  • 67bodily fluid
  • 58eye
  • 42nerve
  • 35embryo
  • 24spleen
  • 21vein
  • 19lung
  • 18ureter
  • 8skeleton
  • 4gonad
  • 4ovary
  • 1bone marrow
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1thymus
Project
  • 474AMP
Genome assembly (visualization)
  • 412GRCh38
  • 412hg19
Lab
  • 474AMP-T2D consortium
Audit category:
  • 8missing controlled_by
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

474 results

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Clear Filters
total RNA-seq
ChIP-seq
WGBS
ATAC-seq
DNase-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue382231
subcutaneous abdominal adipose tissue363
omental fat pad411121
subcutaneous adipose tissue412111
white adipose tissue8
in vitro differentiated cells
white fat cell1
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