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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
390
total RNA-seq
69
ChIP-seq
6
WGBS
3
ATAC-seq
2
DNase-seq
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
392
Transcription
69
DNA binding
6
DNA methylation
5
DNA accessibility
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
13
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
381
February, 2021
53
August, 2017
23
October, 2018
10
July, 2019
1
August, 2018
1
August, 2021
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
October, 2017
Available data
430
bam
413
bigWig
391
tsv
40
fastq
11
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
473
Homo sapiens
Biosample type
473
tissue
1
in vitro differentiated cells
Organ
745
pancreas
616
connective tissue
474
adipose tissue
365
liver
355
epithelium
352
heart
296
kidney
190
brain
187
vasculature
186
blood vessel
150
bone element
130
artery
114
limb
74
musculature of body
54
eye
42
nerve
24
embryo
24
spleen
19
lung
18
ureter
11
blood
11
bodily fluid
8
skeleton
4
gonad
4
ovary
3
vein
1
lymph node
1
pituitary gland
1
skin of body
Project
474
AMP
Genome assembly (visualization)
412
GRCh38
412
hg19
Lab
474
AMP-T2D consortium
Audit category:
8
missing controlled_by
BIOSAMPLE
ASSAY
474 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
DNase-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
omental fat pad
4
11
1
2
1
subcutaneous adipose tissue
4
12
1
1
1
white adipose tissue
8
in vitro differentiated cells
white fat cell
1
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