Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 398total RNA-seq
  • 41ChIP-seq
  • 6ATAC-seq
  • 6WGBS
  • 3small RNA-seq
  • 2DNase-seq
  • 2pCHi-C
  • 1RNA microarray
Assay category
  • 401Transcription
  • 41DNA binding
  • 8DNA accessibility
  • 6DNA methylation
Target of assay
  • 32histone
  • histone modification
  • 24control
  • 20broad histone mark
  • 17transcription factor
  • 12narrow histone mark
  • 5RNA binding protein
Date released
  • 386February, 2021
  • 25August, 2017
  • 23October, 2018
  • 12July, 2019
  • 2February, 2020
  • 1August, 2018
  • 1August, 2021
  • 1February, 2023
  • 1January, 2018
  • 1June, 2019
  • 1March, 2020
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
  • 1October, 2019
Available data
  • 441bam
  • 423bigWig
  • 401tsv
  • 43fastq
  • 11bed narrowPeak
  • 9bigBed narrowPeak
  • 6bed bed3+
  • 2bed bedMethyl
  • 2bed broadPeak
  • 2bigBed bedMethyl
  • 2bigBed broadPeak
  • 1bedpe bed3+
  • 1tagAlign
Organism
  • 458Homo sapiens
Biosample type
  • 456tissue
  • 2primary cell
  • 1in vitro differentiated cells
Organ
  • 795pancreas
  • 688liver
  • 606connective tissue
  • 459adipose tissue
  • 431epithelium
  • 324kidney
  • 296heart
  • 165vasculature
  • 160blood vessel
  • 159bone element
  • 121artery
  • 99brain
  • 73limb
  • 68blood
  • 68bodily fluid
  • 63musculature of body
  • 58eye
  • 25embryo
  • 20lung
  • 19nerve
  • 19spleen
  • 18ureter
  • 16skeleton
  • 7vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 459AMP
Genome assembly (visualization)
  • 424hg19
  • 423GRCh38
Lab
  • 459AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 12missing controlled_by
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

459 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue3821331
subcutaneous adipose tissue712111
omental fat pad511112
white adipose tissue12
subcutaneous abdominal adipose tissue53
primary cell
mesenchymal stem cell of adipose11
in vitro differentiated cells
white fat cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego