Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
281
candidate regulatory elements
187
target gene predictions
161
chromatin state
74
accessible chromatin
59
histone modifications
36
Fine-mapped variants
34
eQTL
25
binding sites
23
gene expression
21
variant allelic effects
Date released
434
September, 2022
213
February, 2021
41
March, 2020
34
June, 2020
31
November, 2021
29
January, 2020
23
January, 2022
20
May, 2021
19
May, 2020
18
February, 2020
10
August, 2017
8
February, 2024
8
October, 2022
5
March, 2024
4
May, 2019
3
September, 2023
1
November, 2019
Available data
650
bed bed3+
151
bed bed9
71
tsv
40
bigWig
6
bigBed bed9
Organism
900
Homo sapiens
Biosample type
703
tissue
114
cell line
79
primary cell
4
in vitro differentiated cells
1
stem cell
Organ
959
epithelium
652
kidney
468
connective tissue
466
brain
375
musculature of body
311
lung
289
intestine
277
pancreas
269
vasculature
257
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
158
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphatic vessel
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
870
AMP
31
ENCODE
Genome assembly (visualization)
849
hg19
275
GRCh38
BIOSAMPLE
TYPE
901 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
histone modifications
Fine-mapped variants
eQTL
binding sites
gene expression
variant allelic effects
tissue
brain
29
16
18
2
3
2
1
1
1
small intestine
29
17
15
1
1
adrenal gland
28
17
14
1
1
1
placenta
26
15
14
1
2
1
1
large intestine
27
14
13
1
1
+ See 78 more…
cell line
SK-N-DZ
4
2
2
1
1
SK-N-SH
4
3
2
1
pituitary stalk
10
HT-29
2
2
1
1
1
1
SK-N-MC
2
1
1
1
1
2
+ See 18 more…
primary cell
fibroblast of villous mesenchyme
2
1
1
1
1
2
choroid plexus epithelial cell
2
1
1
1
1
1
astrocyte of the cerebellum
2
1
1
1
1
astrocyte of the hippocampus
2
1
1
1
1
colon epithelial cell
3
3
+ See 18 more…
in vitro differentiated cells
hippocampal neuron
1
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
stem cell
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download