Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
149
candidate regulatory elements
130
target gene predictions
118
accessible chromatin
99
chromatin state
76
gene expression
59
histone modifications
50
eQTL
47
Fine-mapped variants
35
differential activity
32
variant allelic effects
27
binding sites
2
caQTL
2
sQTL
2
variant to gene
Date released
251
September, 2022
158
February, 2021
53
March, 2020
47
March, 2023
46
May, 2021
37
January, 2020
30
May, 2020
28
June, 2020
26
February, 2024
26
January, 2022
24
February, 2020
20
January, 2021
18
November, 2021
9
August, 2017
8
August, 2021
8
September, 2023
7
August, 2018
7
October, 2022
6
October, 2019
5
May, 2019
5
November, 2019
4
February, 2023
2
March, 2024
1
April, 2019
1
January, 2018
1
June, 2021
Available data
520
bed bed3+
160
tsv
89
bed bed9
87
bigWig
14
bigBed narrowPeak
10
bigBed bed9
3
bam
3
bed gappedPeak
3
csv
3
xls
Organism
827
Homo sapiens
Biosample type
515
tissue
190
primary cell
115
cell line
7
in vitro differentiated cells
1
stem cell
Organ
959
epithelium
652
kidney
468
connective tissue
466
brain
375
musculature of body
311
lung
intestine
277
pancreas
269
vasculature
257
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
158
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphatic vessel
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
783
AMP
20
T1D
18
ENCODE
5
KPMP
2
community
Genome assembly (visualization)
677
hg19
244
GRCh38
organ_slims!
intestine
BIOSAMPLE
TYPE
828 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
accessible chromatin
chromatin state
gene expression
histone modifications
eQTL
Fine-mapped variants
differential activity
variant allelic effects
binding sites
caQTL
sQTL
variant to gene
tissue
brain
29
16
2
18
1
3
2
1
1
islet of Langerhans
1
6
3
11
1
13
2
1
2
2
2
body of pancreas
8
5
4
2
1
3
1
caudate nucleus
5
3
2
4
1
1
2
3
1
pancreas
5
5
5
3
1
1
1
1
+ See 72 more…
primary cell
pancreatic ductal cell
3
6
3
2
3
1
1
pancreatic beta cell
3
8
3
3
1
pancreatic alpha cell
3
7
3
3
1
pancreatic acinar cell
3
6
3
3
1
pancreatic delta cell
4
5
3
3
1
+ See 27 more…
cell line
EndoC_BH1
1
8
8
3
1
SK-N-DZ
4
2
1
2
1
SK-N-SH
4
3
2
1
pituitary stalk
10
SK-N-MC
2
1
1
1
1
2
+ See 16 more…
in vitro differentiated cells
pancreatic ductal cell
3
hippocampal neuron
1
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
stem cell
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download