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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
44
ATAC-seq
6
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
57
Transcription
46
DNA accessibility
6
DNA binding
Target of assay
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
62
February, 2021
35
February, 2023
4
May, 2019
3
July, 2019
2
August, 2021
2
June, 2019
1
February, 2020
1
March, 2020
Available data
71
bam
59
bigWig
58
tsv
48
bed narrowPeak
4
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
tagAlign
Organism
110
Homo sapiens
Biosample type
62
cell line
46
tissue
2
primary cell
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
453
liver
376
heart
344
kidney
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
110
AMP
Genome assembly (visualization)
102
GRCh38
67
hg19
Lab
110
AMP-T2D consortium
organ_slims!
limb
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
110 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
8
2
tissue
coronary artery
1
36
4
2
pulmonary artery
2
esophagus
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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