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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
total RNA-seq
61
ATAC-seq
28
ChIP-seq
7
DNase-seq
4
pCHi-C
2
single cell RNA-seq
Assay category
74
Transcription
68
DNA accessibility
28
DNA binding
Target of assay
22
histone
22
histone modification
14
broad histone mark
9
control
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
52
February, 2023
41
October, 2019
5
June, 2019
3
February, 2020
3
May, 2019
2
August, 2021
2
July, 2019
Available data
98
bam
86
bed narrowPeak
81
bigWig
60
tsv
22
bigBed narrowPeak
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
6
tagAlign
Organism
174
Homo sapiens
Biosample type
107
tissue
66
cell line
1
primary cell
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
epithelium
353
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
174
AMP
Genome assembly (visualization)
124
GRCh38
104
hg19
Lab
174
AMP-T2D consortium
organ_slims!
epithelium
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
174 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
pCHi-C
single cell RNA-seq
tissue
coronary artery
1
36
3
2
tibial artery
1
1
19
2
retina
3
15
3
islet of Langerhans
14
1
4
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
smooth muscle cell of the coronary artery
1
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